7USE | pdb_00007use

Cryo-EM structure of WAVE regulatory complex with Rac1 bound on both A and D site

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyRas-like P-loop GTPases 8057406 3002022 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRas-like P-loop GTPases 8057406 3002022 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCullin repeat-like 8090821 3000059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EActine7useE1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: ActinECOD (v294.1)
GActine7useG1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: ActinECOD (v294.1)
FActine7useF1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: ActinECOD (v294.1)
BActine7useB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: ActinECOD (v294.1)
AActine7useA1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: ActinECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07815Abl-interactor HHR (Abi_HHR)Abl-interactor HHR- Family
PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
PF09735Nck-associated protein 1 (Nckap1)Nck-associated protein 1- Family
PF05994Cytoplasmic Fragile-X interacting family (FragX_IP)Cytoplasmic Fragile-X interacting family- Family
PF07159CYRIA/CYRIB Rac1 binding domain (CYRIA-B_Rac1-bd)CYRIA/CYRIB Rac1 binding domainThis domain has been annotated as Rac1-binding domain [1, 2]. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2 [3]. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization [3]. In mice, CYRIB (also known as C ...This domain has been annotated as Rac1-binding domain [1, 2]. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2 [3]. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization [3]. In mice, CYRIB (also known as CYRI or FAM49B) negatively regulates RAC1-driven cytoskeletal remodelling and plays a role in restricting infection mediated by Mycobacterium tuberculosis and Listeria monocytogenes [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Abl interactor 2
Ras-related C3 botulinum toxin substrate 1
Ras-related C3 botulinum toxin substrate 1
Protein BRICK1
Wiskott-Aldrich syndrome protein family member 1
Nck-associated protein 1-
Cytoplasmic FMR1-interacting protein 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000727Target SNARE coiled-coil homology domainDomain
IPR036028SH3-like domain superfamilyHomologous Superfamily
IPR028457ABI familyFamily
IPR001452SH3 domainDomain
IPR035726Abl interactor 2, SH3 domainDomain
IPR012849Abl-interactor, homeo-domain homologous domainDomain
IPR001806Small GTPaseFamily
IPR003578Small GTPase RhoFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005225Small GTP-binding domainDomain
IPR001806Small GTPaseFamily
IPR003578Small GTPase RhoFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005225Small GTP-binding domainDomain
IPR033378Protein BRICK1Family
IPR003124WH2 domainDomain
IPR028288SCAR/WAVE familyFamily
IPR019137Nck-associated protein 1Family
IPR008081Cytoplasmic FMR1-interactingFamily
IPR009828CYRIA/CYRIB, Rac1 binding domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Pharos:  Q9NYB9
Pharos:  P63000
Pharos:  P63000
Pharos:  Q8WUW1
Pharos:  Q92558
Pharos:  Q9Y2A7
Pharos:  Q7L576