PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain - Domain PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain - Domain J [auth C] PF14374 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) 60S ribosomal protein L4 C-terminal domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain J [auth C] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family K [auth D] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family K [auth D] PF14204 Ribosomal L18 C-terminal region (Ribosomal_L18_c) Ribosomal L18 C-terminal region This domain is the C-terminal end of ribosomal L18/L5 proteins. Domain L [auth E] PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family M [auth F] PF08079 Ribosomal L30 N-terminal domain (Ribosomal_L30_N) Ribosomal L30 N-terminal domain This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain M [auth F] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain O [auth H] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 - Domain P [auth I] PF12171 Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz) Zinc-finger double-stranded RNA-binding - Family Q [auth J] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 - Domain Q [auth J] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain R [auth K] PF00687 Ribosomal protein L1p/L10e family (Ribosomal_L1) Ribosomal protein L1p/L10e family This family includes prokaryotic L1 and eukaryotic L10. Domain S [auth L] PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family T [auth M] PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family T [auth M] PF00467 KOW motif (KOW) KOW motif - Family U [auth N] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family V [auth O] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family W [auth P] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain X [auth Q] PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family Y [auth R] PF01280 Ribosomal protein L19e (Ribosomal_L19e) Ribosomal protein L19e - Family Z [auth S] PF01775 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain AA [auth T] PF01157 Ribosomal protein L21e (Ribosomal_L21e) Ribosomal protein L21e - Family BA [auth U] PF01776 Ribosomal L22e protein family (Ribosomal_L22e) Ribosomal L22e protein family - Family CA [auth V] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e - Domain DA [auth W] PF17777 Insertion domain in 60S ribosomal protein L10P (RL10P_insert) Insertion domain in 60S ribosomal protein L10P This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain DA [auth W] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family EA [auth X] PF03939 Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) Ribosomal protein L23, N-terminal domain - Family EA [auth X] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family FA [auth Y] PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family FA [auth Y] PF00467 KOW motif (KOW) KOW motif - Family GA [auth Z] PF01777 Ribosomal L27e protein family (Ribosomal_L27e) Ribosomal L27e protein family - Family HA [auth a] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A - Family IA [auth b] PF08155 NOGCT (NUC087) domain (NOGCT) NOGCT (NUC087) domain This C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. Domain IA [auth b] PF06858 Nucleolar GTP-binding protein 1 (NOG1) (NOG1) Nucleolar GTP-binding protein 1 (NOG1) - Family IA [auth b] PF17835 NOG1 N-terminal helical domain (NOG1_N) NOG1 N-terminal helical domain This domain is found at the N-terminus of NOG1 GTPase proteins. Domain JA [auth c] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain KA [auth d] PF01198 Ribosomal protein L31e (Ribosomal_L31e) Ribosomal protein L31e - Family LA [auth e] PF01655 Ribosomal protein L32 (Ribosomal_L32e) Ribosomal protein L32 - Family MA [auth f] PF01247 Ribosomal protein L35Ae (Ribosomal_L35Ae) Ribosomal protein L35Ae - Domain NA [auth g] PF01199 Ribosomal protein L34e (Ribosomal_L34e) Ribosomal protein L34e - Family OA [auth h] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family PA [auth i] PF01158 Ribosomal protein L36e (Ribosomal_L36e) Ribosomal protein L36e - Family QA [auth j] PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family RA [auth k] PF01781 Ribosomal L38e protein family (Ribosomal_L38e) Ribosomal L38e protein family - Family SA [auth l] PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family TA [auth m] PF08153 NGP1NT (NUC091) domain (NGP1NT) NGP1NT (NUC091) domain This N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1]. Domain TA [auth m] PF01926 50S ribosome-binding GTPase (MMR_HSR1) 50S ribosome-binding GTPase - Family UA [auth n] PF16589 BRCT domain, a BRCA1 C-terminus domain (BRCT_2) BRCT domain, a BRCA1 C-terminus domain - Family VA [auth o] PF00076 RNA recognition motif (RRM_1) RNA recognition motif The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Domain WA [auth p] PF01780 Ribosomal L37ae protein family (Ribosomal_L37ae) Ribosomal L37ae protein family - Family E [auth 5] PF03879 Cgr1 family (Cgr1) Cgr1 family - Coiled-coil XA [auth q] PF07767 Nop53 (60S ribosomal biogenesis) (Nop53) Nop53 (60S ribosomal biogenesis) - Family YA [auth r] PF01201 Ribosomal protein S8e (Ribosomal_S8e) Ribosomal protein S8e - Family ZA [auth s] PF08701 GNL3L/Grn1 putative GTPase (GN3L_Grn1) GNL3L/Grn1 putative GTPase - Family AB [auth t] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain BB [auth u] PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e - Domain CB [auth v] PF04427 Brix domain (Brix) Brix domain - Domain DB [auth w] PF04939 Ribosome biogenesis regulatory protein (RRS1) (RRS1) Ribosome biogenesis regulatory protein (RRS1) - Family EB [auth x] PF00400 WD domain, G-beta repeat (WD40) WD domain, G-beta repeat - Repeat FB [auth y] PF01912 eIF-6 family (eIF-6) eIF-6 family - Family GB [auth z] PF10338 Protein of unknown function (DUF2423) (DUF2423) Protein of unknown function (DUF2423) - Family G [auth 8] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain G [auth 8] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain - Domain I [auth B] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family 
