7VB9 | pdb_00007vb9

Rba sphaeroides PufY-KO RC-LH1 dimer type-2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
S [auth C]SCOP2B SuperfamilyPufX membrane protein-like 8092158 3002563 SCOP2B (2022-06-29)
YA [auth c]SCOP2B SuperfamilyPufX membrane protein-like 8092158 3002563 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
LA [auth t]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
PA [auth x]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
X [auth b]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Z [auth e]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
XA [auth ab]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
VA [auth aa]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
R [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
P [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
JA [auth r]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
DA [auth j]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
BA [auth g]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain 8099396 3000637 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100956 3000750 SCOP2B (2022-06-29)
V [auth h]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100956 3000750 SCOP2B (2022-06-29)
V [auth h]SCOP2B SuperfamilyPRC-barrel domain 8099396 3000637 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099400 3000736 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099400 3000736 SCOP2B (2022-06-29)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099398 3000736 SCOP2B (2022-06-29)
T [auth l]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099398 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
S [auth C]e7vb9C1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
YA [auth c]e7vb9c1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
E [auth B]e7vb9B1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
FA [auth n]e7vb9n1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
G [auth E]e7vb9E1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
K [auth J]e7vb9J1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
LA [auth t]e7vb9t1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
PA [auth x]e7vb9x1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
X [auth b]e7vb9b1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
Z [auth e]e7vb9e1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
XA [auth ab]e7vb9ab1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
VA [auth aa]e7vb9aa1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
TA [auth 4]e7vb941 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
RA [auth z]e7vb9z1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
R [auth 0]e7vb901 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
P [auth 8]e7vb981 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
NA [auth v]e7vb9v1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
M [auth N]e7vb9N1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
JA [auth r]e7vb9r1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
I [auth G]e7vb9G1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
HA [auth p]e7vb9p1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
DA [auth j]e7vb9j1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
BA [auth g]e7vb9g1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
CA [auth i]e7vb9i1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
EA [auth k]e7vb9k1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
GA [auth o]e7vb9o1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
H [auth F]e7vb9F1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
J [auth I]e7vb9I1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
MA [auth u]e7vb9u1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
Q [auth 9]e7vb991 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
SA [auth 5]e7vb951 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
UA [auth 6]e7vb961 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
W [auth a]e7vb9a1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
WA [auth Q]e7vb9Q1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
Y [auth d]e7vb9d1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
QA [auth y]e7vb9y1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
OA [auth w]e7vb9w1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
O [auth 7]e7vb971 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
N [auth O]e7vb9O1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
L [auth K]e7vb9K1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
KA [auth s]e7vb9s1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
IA [auth q]e7vb9q1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
F [auth D]e7vb9D1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
D [auth A]e7vb9A1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
AA [auth f]e7vb9f1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
C [auth H]e7vb9H1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
V [auth h]e7vb9h1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
B [auth M]e7vb9M1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
U [auth m]e7vb9m1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
A [auth L]e7vb9L1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)
T [auth l]e7vb9l1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Aminotran_3F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
S [auth C],
YA [auth c]
PF11511Intrinsic membrane protein PufX (RhodobacterPufX)Intrinsic membrane protein PufX- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
C [auth H],
V [auth h]
PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H],
V [auth h]
PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
B [auth M],
U [auth m]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
A [auth L],
T [auth l]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
S [auth C],
YA [auth c]
Intrinsic membrane protein PufX-
Light-harvesting protein B-875 beta chain
Light-harvesting protein B-875 alpha chain
C [auth H],
V [auth h]
Reaction center protein H chain
B [auth M],
U [auth m]
Reaction center protein M chain
A [auth L],
T [auth l]
Reaction center protein L chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
S [auth C],
YA [auth c]
IPR020169Intrinsic membrane protein family, PufXFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
C [auth H],
V [auth h]
IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H],
V [auth h]
IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H],
V [auth h]
IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H],
V [auth h]
IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H],
V [auth h]
IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H],
V [auth h]
IPR027275PRC-barrel domainDomain
B [auth M],
U [auth m]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M],
U [auth m]
IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M],
U [auth m]
IPR000484Photosynthetic reaction centre, L/MFamily
B [auth M],
U [auth m]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L],
T [auth l]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L],
T [auth l]
IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L],
T [auth l]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L],
T [auth l]
IPR005871Photosynthetic reaction centre, L subunitFamily