Annotations: 7VEB

Phycocyanin rod structure of cyanobacterial phycobilisome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	Phycobilisome linker domain-like	8052323	3002104	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Phycobilisome linker domain-like	8052322	3002104	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth a]	FKBP_C	e7veba1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
Z	FKBP_C	e7vebZ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
Y	FKBP_C	e7vebY1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
X	FKBP_C	e7vebX1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
V	FKBP_C	e7vebV1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
T	FKBP_C	e7vebT1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
R	FKBP_C	e7vebR1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
P	FKBP_C	e7vebP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
N	FKBP_C	e7vebN1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
L	FKBP_C	e7vebL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
J	FKBP_C	e7vebJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
H	FKBP_C	e7vebH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
F	FKBP_C	e7vebF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
D	FKBP_C	e7vebD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
B	FKBP_C	e7vebB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
W	FKBP_C	e7vebW1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
U	FKBP_C	e7vebU1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
S	FKBP_C	e7vebS1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
Q	FKBP_C	e7vebQ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
O	FKBP_C	e7vebO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
M	FKBP_C	e7vebM1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
K	FKBP_C	e7vebK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
I	FKBP_C	e7vebI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
G	FKBP_C	e7vebG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
E	FKBP_C	e7vebE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
C	FKBP_C	e7vebC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)
A	FKBP_C	e7vebA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: FKBP_C	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
Z	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
Z	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
Y	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a]	Phycobilisome rod-core linker polypeptide CpcG2	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
Z	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
Y	Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	C-phycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a]	IPR001297	Phycobilisome linker domain	Domain
AA [auth a]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
Z	IPR016470	Phycobilisome linker protein	Family
Z	IPR008213	CpcD-like domain	Domain
Z	IPR001297	Phycobilisome linker domain	Domain
Z	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
Y	IPR008213	CpcD-like domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR006247	Phycocyanin, beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR012128	Phycobilisome, alpha/beta subunit	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR006246	Phycocyanin, alpha subunit	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR012128	Phycobilisome, alpha/beta subunit	Family