7XTG
Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e7xtgB1 | A: alpha bundles | X: Bromodomain-like | H: Carnobacteriocin B2 immunity protein (From Topology) | T: Carnobacteriocin B2 immunity protein | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e7xtgF1 | A: alpha bundles | X: Bromodomain-like | H: Carnobacteriocin B2 immunity protein (From Topology) | T: Carnobacteriocin B2 immunity protein | F: F_UNCLASSIFIED | ECOD (1.6) |
J | F_UNCLASSIFIED | e7xtgJ1 | A: alpha bundles | X: Bromodomain-like | H: Carnobacteriocin B2 immunity protein (From Topology) | T: Carnobacteriocin B2 immunity protein | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01721 | Class II bacteriocin (Bacteriocin_II) | Class II bacteriocin | - | Family | |
E, I, L [auth Z] | PF03613 | PTS system mannose/fructose/sorbose family IID component (EIID-AGA) | PTS system mannose/fructose/sorbose family IID component | - | Family |
D, H, K [auth Y] | PF03609 | PTS system sorbose-specific iic component (EII-Sor) | PTS system sorbose-specific iic component | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002633 | Bacteriocin, class IIa | Family | |
IPR023388 | Bacteriocin class IIa domain superfamily | Homologous Superfamily | |
IPR023384 | Bacteriocin, class IIa, conserved site | Conserved Site | |
IPR010133 | Bacteriocin-type signal sequence | Conserved Site | |
E, I, L [auth Z] | IPR004704 | Phosphotransferase system, mannose/fructose/sorbose family IID component | Family |
D, H, K [auth Y] | IPR004700 | Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |