7JHG | pdb_00007jhg

Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and Fab-nanobody


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8081561 3000066 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAMPKBI-like 8037381 3000446 SCOP2B (2022-06-29)
D [auth M]SCOP2B SuperfamilyType 2 solute binding protein-like 8058187 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibosomal_L14ee7jhgA1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
BRibosomal_L14ee7jhgB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
C [auth G]Ribosomal_L14ee7jhgG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
D [auth M]Ribosomal_L14ee7jhgM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
E [auth L]Ribosomal_L14ee7jhgL1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
F [auth H]Ribosomal_L14ee7jhgH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)
G [auth N]Ribosomal_L14ee7jhgN1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L14eECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
F [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E [auth L]Light ChainIGKV1 Kappa5'-amp-activated protein kinase catalytic subunit alpha-1SAbDab (2026-03-27)
F [auth H]Heavy ChainIGHV3 -5'-amp-activated protein kinase catalytic subunit alpha-1SAbDab (2026-03-27)
G [auth N]Heavy ChainIGHV1 --SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
PF16579Adenylate sensor of SNF1-like protein kinase (AdenylateSensor)Adenylate sensor of SNF1-like protein kinaseAdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. Domain
PF047395'-AMP-activated protein kinase beta subunit, interaction domain (AMPKBI)5'-AMP-activated protein kinase beta subunit, interaction domain- Family
C [auth G]PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain
D [auth M]PF01547Bacterial extracellular solute-binding protein (SBP_bac_1)Bacterial extracellular solute-binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
5'-AMP-activated protein kinase catalytic subunit alpha-1
5'-AMP-activated protein kinase subunit beta-2
C [auth G]5'-AMP-activated protein kinase subunit gamma-1
D [auth M]Maltodextrin-binding protein
E [auth L]Fab light chain---
F [auth H]Fab heavy chain---
G [auth N]Nanobody---