8B3O | pdb_00008b3o

CryoEM structure of the pointy tip (proteins pIII/pVI/pVIII) from the f1 filamentous bacteriophage

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth HHH]	MIF4G	e8b3oHHH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
PA [auth JJJ]	MIF4G	e8b3oJJJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
O [auth GGG]	MIF4G	e8b3oGGG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
GA [auth III]	MIF4G	e8b3oIII1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F [auth FFF]	IFT52_GIFT	e8b3oFFF01	A: beta barrels	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: IFT52_GIFT	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth FFF], GA [auth III], O [auth GGG], PA [auth JJJ], X [auth HHH]	Attachment protein G3P	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell non-lytic viral release viral extrusion viral release from host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell non-lytic viral release viral extrusion viral release from host cell entry receptor-mediated virion attachment to host cell virion attachment to host cell pilus symbiont entry into host cell symbiont entry into host	viral capsid virion component host cellular component cellular anatomical structure host cell part host cell membrane other organism part
E [auth AAA], FA [auth DDD], N [auth BBB], OA [auth EEE], W [auth CCC]	Head virion protein G6P	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion component
A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], CA [auth SSS], D [auth ZZZ], DA [auth XXX], EA [auth ccc], G [auth eee], H [auth jjj], HA [auth hhh], I [auth ooo], IA [auth mmm], J [auth LLL], JA [auth rrr], K [auth QQQ], KA [auth OOO], L [auth VVV], LA [auth TTT], M [auth aaa], MA [auth YYY], NA [auth ddd], P [auth fff], Q [auth kkk], QA [auth iii], R [auth ppp], RA [auth nnn], S [auth MMM], SA [auth sss], T [auth RRR], U [auth WWW], V [auth bbb], Y [auth ggg], Z [auth lll]	Capsid protein G8P	-	-	host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth FFF], GA [auth III], O [auth GGG], PA [auth JJJ], X [auth HHH]	IPR036200	Attachment protein G3P, N-terminal domain superfamily	Homologous Superfamily
F [auth FFF], GA [auth III], O [auth GGG], PA [auth JJJ], X [auth HHH]	IPR013834	Bacteriophage, G3P, N2-domain superfamily	Homologous Superfamily
F [auth FFF], GA [auth III], O [auth GGG], PA [auth JJJ], X [auth HHH]	IPR008021	Attachment protein G3P, N-terminal	Domain
E [auth AAA], FA [auth DDD], N [auth BBB], OA [auth EEE], W [auth CCC]	IPR035210	Protein of unknown function DUF5455	Family
A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], CA [auth SSS], D [auth ZZZ], DA [auth XXX], EA [auth ccc], G [auth eee], H [auth jjj], HA [auth hhh], I [auth ooo], IA [auth mmm], J [auth LLL], JA [auth rrr], K [auth QQQ], KA [auth OOO], L [auth VVV], LA [auth TTT], M [auth aaa], MA [auth YYY], NA [auth ddd], P [auth fff], Q [auth kkk], QA [auth iii], R [auth ppp], RA [auth nnn], S [auth MMM], SA [auth sss], T [auth RRR], U [auth WWW], V [auth bbb], Y [auth ggg], Z [auth lll]	IPR008020	Capsid protein G8P	Family
A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], A [auth KKK], AA [auth qqq], B [auth PPP], BA [auth NNN], C [auth UUU], CA [auth SSS], D [auth ZZZ], DA [auth XXX], EA [auth ccc], G [auth eee], H [auth jjj], HA [auth hhh], I [auth ooo], IA [auth mmm], J [auth LLL], JA [auth rrr], K [auth QQQ], KA [auth OOO], L [auth VVV], LA [auth TTT], M [auth aaa], MA [auth YYY], NA [auth ddd], P [auth fff], Q [auth kkk], QA [auth iii], R [auth ppp], RA [auth nnn], S [auth MMM], SA [auth sss], T [auth RRR], U [auth WWW], V [auth bbb], Y [auth ggg], Z [auth lll]	IPR023390	Bacteriophage M13, G8P, capsid domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.