Annotations: 8C83

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth P]	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8061280	3001397	SCOP2B (2022-06-29)
F [auth S]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052759	3000135	SCOP2B (2022-06-29)
F [auth S]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8052758	3001473	SCOP2B (2022-06-29)
F [auth S]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8052760	3000334	SCOP2B (2022-06-29)
K [auth X]	SCOP2B Superfamily	Ribosomal S17 N-terminal domain-like	8052736	3002138	SCOP2B (2022-06-29)
K [auth X]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052738	3000135	SCOP2B (2022-06-29)
L [auth Y]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8052974	3001284	SCOP2B (2022-06-29)
L [auth Y]	SCOP2B Superfamily	Homeodomain-like	8052973	3000001	SCOP2B (2022-06-29)
M [auth a]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8053136	3000068	SCOP2B (2022-06-29)
N [auth b]	SCOP2B Superfamily	Ribosomal protein S8	8096922	3000709	SCOP2B (2022-06-29)
R [auth g]	SCOP2B Superfamily	Ribosomal protein S30e-like	8053451	3002190	SCOP2B (2022-06-29)
G [auth T]	SCOP2B Superfamily	GS N-terminal domain-like	8053173	3000408	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth x]	OTU	e8c83x01	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: OTU	ECOD (develop294)
D [auth P]	Cullin_AB	e8c83P1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
F [auth S]	Cullin_AB	e8c83S1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
H [auth U]	Cullin_AB	e8c83U1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
I [auth V]	Cullin_AB	e8c83V1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
J [auth W]	Cullin_AB	e8c83W1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
K [auth X]	Cullin_AB	e8c83X1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
L [auth Y]	Cullin_AB	e8c83Y1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
M [auth a]	Cullin_AB	e8c83a1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
N [auth b]	Cullin_AB	e8c83b1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
O [auth c]	Cullin_AB	e8c83c1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
P [auth d]	Cullin_AB	e8c83d1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
Q [auth f]	Cullin_AB	e8c83f1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
R [auth g]	Cullin_AB	e8c83g1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
G [auth T]	Cullin_AB	e8c83T1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
E [auth R]	Cullin_AB	e8c83R1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)
B [auth y]	Cullin_AB	e8c83y1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth x]	3.90.70.80	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
D [auth P]	3.40.50.10490	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glucose-6-phosphate isomerase like protein	CATH (utative)
B [auth y]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth P]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
F [auth S]	PF00900	Ribosomal family S4e (Ribosomal_S4e)	Ribosomal family S4e	-	Family
F [auth S]	PF16121	40S ribosomal protein S4 C-terminus (40S_S4_C)	40S ribosomal protein S4 C-terminus	-	Family
F [auth S]	PF08071	RS4NT (NUC023) domain (RS4NT)	RS4NT (NUC023) domain	This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].	Domain
F [auth S]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
F [auth S]	PF00467	KOW motif (KOW)	KOW motif	-	Family
H [auth U]	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
I [auth V]	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family
J [auth W]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
J [auth W]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
K [auth X]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17		Domain
K [auth X]	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
L [auth Y]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
L [auth Y]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain
G [auth T]	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family
E [auth R]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain		Domain
E [auth R]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth x]	OTU domain-containing protein 2	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm
C [auth 2]	18S ribosomal RNA	-	-	-
D [auth P]	40S ribosomal protein S0-A	structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA RNA 3'-end processing cellular component organization or biogenesis RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nucleobase-containing compound biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA 3'-end processing establishment of organelle localization cellular localization nucleocytoplasmic transport transport nuclear transport ribosomal subunit export from nucleus intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear export ribosome localization organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly cellular component organization organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribosome assembly endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol 90S preribosome preribosome intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit ribosomal subunit cytosolic ribosome ribosome
F [auth S]	40S ribosomal protein S4-A	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle membraneless organelle ribosome
H [auth U]	40S ribosomal protein S7-A	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process translation protein biosynthetic process cytoplasmic translation protein metabolic process ribosomal small subunit biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle membraneless organelle ribosome membrane-bounded organelle nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen organelle lumen nuclear lumen nucleoplasm
I [auth V]	40S ribosomal protein S8-B	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle membraneless organelle ribosome
J [auth W]	40S ribosomal protein S9-A	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle ribonucleoprotein complex membraneless organelle nuclear lumen cytoplasm cytosol 90S preribosome cytosolic small ribosomal subunit small ribosomal subunit ribosomal subunit cytosolic ribosome ribosome nucleoplasm
K [auth X]	40S ribosomal protein S11-A	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly cellular component organization organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribosome assembly protein metabolic process translation protein biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle membraneless organelle ribosome
L [auth Y]	40S ribosomal protein S13	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process nucleobase-containing compound biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit ribosomal subunit cytosolic ribosome ribosome
M [auth a]	40S ribosomal protein S21-A	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA RNA 3'-end processing cellular component organization or biogenesis RNA processing rRNA metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA RNA 3'-end processing cellular component organization or biogenesis RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process rRNA 3'-end processing cellular process metabolic process macromolecule metabolic process endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) protein metabolic process translation protein biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome
N [auth b]	40S ribosomal protein S22-A	structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome
O [auth c]	40S ribosomal protein S23-A	structural molecule activity structural constituent of ribosome	biological regulation regulation of biological quality regulation of translational fidelity maintenance of translational fidelity primary metabolic process translation gene expression macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process biological regulation regulation of biological quality regulation of translational fidelity maintenance of translational fidelity primary metabolic process translation gene expression macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process nucleobase-containing compound biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome
P [auth d]	40S ribosomal protein S24-A	structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process nucleobase-containing compound biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit cytosolic ribosome ribonucleoprotein complex membraneless organelle ribosome
Q [auth f]	40S ribosomal protein S27-A	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process maturation of SSU-rRNA RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process biosynthetic process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome
R [auth g]	40S ribosomal protein S30-A	structural molecule activity structural constituent of ribosome	regulation of cellular process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression protein metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process translational readthrough gene expression translation regulation of cellular process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression protein metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process translational readthrough gene expression translation macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of translation translational elongation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cytoplasmic translation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex cytoplasmic stress granule cytosolic small ribosomal subunit protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex cytoplasmic stress granule cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome
G [auth T]	40S ribosomal protein S6-A	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle membraneless organelle ribosome membrane-bounded organelle nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen organelle lumen nuclear lumen nucleoplasm
E [auth R]	40S ribosomal protein S2	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of cellular process positive regulation of protein metabolic process positive regulation of biological process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of cellular process positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of translational fidelity positive regulation of macromolecule metabolic process regulation of biological quality positive regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of gene expression positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process regulation of translational fidelity establishment of organelle localization cellular localization ribonucleoprotein complex biogenesis nucleocytoplasmic transport transport nuclear transport ribosomal subunit export from nucleus intracellular transport establishment of localization cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis nuclear export ribosome localization RNA metabolic process rRNA processing nucleobase-containing compound biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process	membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membraneless organelle intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle ribonucleoprotein complex membraneless organelle nuclear lumen cytoplasm cytosol cytosolic small ribosomal subunit small ribosomal subunit ribosomal subunit cytosolic ribosome ribosome nucleoplasm
B [auth y]	Ubiquitin	protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) cellular component organization or biogenesis RNA processing rRNA metabolic process nucleobase-containing compound biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process protein catabolic process macromolecule catabolic process organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly cellular component organization organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribosome assembly maintenance of translational fidelity protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth x]	IPR050704	Peptidase C85-like	Family
A [auth x]	IPR003323	OTU domain	Domain
A [auth x]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A [auth x]	IPR049771	OTU domain-containing protein 2-like, ovarian tumor domain	Domain
D [auth P]	IPR027498	Small ribosomal subunit protein uS2, eukaryota	Family
D [auth P]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
D [auth P]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
D [auth P]	IPR001865	Small ribosomal subunit protein uS2	Family
D [auth P]	IPR005707	Small ribosomal subunit protein uS2, eukaryota/archaea	Family
F [auth S]	IPR018199	Small ribosomal subunit protein eS4, N-terminal, conserved site	Conserved Site
F [auth S]	IPR013843	Small ribosomal subunit protein eS4, N-terminal	Domain
F [auth S]	IPR032277	Small ribosomal subunit protein eS4, C-terminal domain	Domain
F [auth S]	IPR002942	RNA-binding S4 domain	Domain
F [auth S]	IPR013845	Small ribosomal subunit protein eS4, central region	Domain
F [auth S]	IPR000876	Small ribosomal subunit protein eS4	Family
F [auth S]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
F [auth S]	IPR038237	Small ribosomal subunit protein eS4, central domain superfamily	Homologous Superfamily
F [auth S]	IPR041982	Small ribosomal subunit protein eS4, KOW domain	Domain
F [auth S]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
F [auth S]	IPR005824	KOW	Domain
H [auth U]	IPR000554	Small ribosomal subunit protein eS7	Family
H [auth U]	IPR047861	Small ribosomal subunit protein eS7, conserved site	Conserved Site
I [auth V]	IPR001047	Small ribosomal subunit protein eS8	Family
I [auth V]	IPR042563	Small ribosomal subunit protein eS8 subdomain, eukaryota	Homologous Superfamily
I [auth V]	IPR022309	Ribosomal protein eS8/ribosomal biogenesis NSA2	Family
I [auth V]	IPR018283	Small ribosomal subunit protein eS8, conserved site	Conserved Site
J [auth W]	IPR002942	RNA-binding S4 domain	Domain
J [auth W]	IPR022801	Small ribosomal subunit protein uS4	Family
J [auth W]	IPR005710	Small ribosomal subunit protein uS4, eukaryota/archaea	Family
J [auth W]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
J [auth W]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
J [auth W]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
K [auth X]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
K [auth X]	IPR032440	Small ribosomal subunit protein uS17, N-terminal	Domain
K [auth X]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
K [auth X]	IPR000266	Small ribosomal subunit protein uS17	Family
K [auth X]	IPR028333	Small ribosomal subunit protein uS17, archaeal/eukaryotic	Family
L [auth Y]	IPR012606	Small ribosomal subunit protein uS15, N-terminal	Domain
L [auth Y]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
L [auth Y]	IPR000589	Small ribosomal subunit protein uS15	Family
L [auth Y]	IPR023029	Small ribosomal subunit protein uS15, archaea/eukaryota	Family
M [auth a]	IPR038579	Small ribosomal subunit protein eS21 superfamily	Homologous Superfamily
M [auth a]	IPR018279	Small ribosomal subunit protein eS21, conserved site	Conserved Site
M [auth a]	IPR001931	Small ribosomal subunit protein eS21	Family
N [auth b]	IPR000630	Small ribosomal subunit protein uS8	Family
N [auth b]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
N [auth b]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
O [auth c]	IPR006032	Small ribosomal subunit protein uS12	Family
O [auth c]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
O [auth c]	IPR005680	Small ribosomal subunit protein uS12, eukaryota/archaea	Family
P [auth d]	IPR053709	Eukaryotic Ribosomal Protein eS24	Homologous Superfamily
P [auth d]	IPR001976	Small ribosomal subunit protein eS24	Family
P [auth d]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
P [auth d]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
Q [auth f]	IPR023407	Small ribosomal subunit protein eS27, zinc-binding domain superfamily	Homologous Superfamily
Q [auth f]	IPR000592	Small ribosomal subunit protein eS27	Family
Q [auth f]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
R [auth g]	IPR006846	Small ribosomal subunit protein eS30	Family
G [auth T]	IPR014401	Small ribosomal subunit protein eS6-like	Family
G [auth T]	IPR001377	Small ribosomal subunit protein eS6	Family
G [auth T]	IPR018282	Small ribosomal subunit protein eS6, conserved site	Conserved Site
E [auth R]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth R]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth R]	IPR005711	Small ribosomal subunit protein uS5, eukaryota_archaea	Family
E [auth R]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth R]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth R]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E [auth R]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
B [auth y]	IPR019954	Ubiquitin conserved site	Conserved Site
B [auth y]	IPR000626	Ubiquitin-like domain	Domain
B [auth y]	IPR038582	Small ribosomal subunit protein eS31 eukaryotic superfamily	Homologous Superfamily
B [auth y]	IPR002906	Small ribosomal subunit protein eS31	Domain
B [auth y]	IPR019956	Ubiquitin domain	Domain
B [auth y]	IPR050158	Ubiquitin and ubiquitin-like	Family
B [auth y]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B [auth y]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily