8CXM | pdb_00008cxm

Cryo-EM structure of the supercoiled E. coli K12 flagellar filament core, Normal waveform

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth Z]	PHF5	e8cxmZ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
AA [auth b]	PHF5	e8cxmb1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
AB [auth z]	PHF5	e8cxmz1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
B	PHF5	e8cxmB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
BA [auth c]	PHF5	e8cxmc1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
BB [auth 0]	PHF5	e8cxm01	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
C	PHF5	e8cxmC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
CA [auth d]	PHF5	e8cxmd1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
CB [auth 1]	PHF5	e8cxm11	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
D	PHF5	e8cxmD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
DA [auth e]	PHF5	e8cxme1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
E	PHF5	e8cxmE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
EA [auth 2]	PHF5	e8cxm21	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
F	PHF5	e8cxmF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
FA [auth f]	PHF5	e8cxmf1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
G	PHF5	e8cxmG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
GA [auth g]	PHF5	e8cxmg1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
H	PHF5	e8cxmH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
HA [auth h]	PHF5	e8cxmh1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
I	PHF5	e8cxmI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
IA [auth i]	PHF5	e8cxmi1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
J	PHF5	e8cxmJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
JA [auth j]	PHF5	e8cxmj1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
K	PHF5	e8cxmK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
KA [auth k]	PHF5	e8cxmk1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
L	PHF5	e8cxmL1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
LA [auth A]	PHF5	e8cxmA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
M	PHF5	e8cxmM1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
MA [auth l]	PHF5	e8cxml1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
N	PHF5	e8cxmN1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
NA [auth m]	PHF5	e8cxmm1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
O	PHF5	e8cxmO1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
OA [auth n]	PHF5	e8cxmn1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
P	PHF5	e8cxmP1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
PA [auth o]	PHF5	e8cxmo1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Q	PHF5	e8cxmQ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
QA [auth p]	PHF5	e8cxmp1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
R	PHF5	e8cxmR1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
RA [auth q]	PHF5	e8cxmq1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
S	PHF5	e8cxmS1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
SA [auth r]	PHF5	e8cxmr1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
T	PHF5	e8cxmT1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
TA [auth s]	PHF5	e8cxms1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
U	PHF5	e8cxmU1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
UA [auth t]	PHF5	e8cxmt1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
V	PHF5	e8cxmV1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
VA [auth u]	PHF5	e8cxmu1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
W	PHF5	e8cxmW1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
WA [auth v]	PHF5	e8cxmv1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
X	PHF5	e8cxmX1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
XA [auth w]	PHF5	e8cxmw1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Y	PHF5	e8cxmY1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
YA [auth x]	PHF5	e8cxmx1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Z [auth a]	PHF5	e8cxma1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
ZA [auth y]	PHF5	e8cxmy1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	Flagellin	structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR049365	Flagellin, barrel domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR046358	Flagellin, C-terminal domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR014981	Flagellin D3	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR001029	Flagellin, N-terminal domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR001492	Flagellin	Family