8CXM | pdb_00008cxm

Cryo-EM structure of the supercoiled E. coli K12 flagellar filament core, Normal waveform

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth y]	Peptidase_S29	e8cxmy1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
Z [auth a]	Peptidase_S29	e8cxma1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
YA [auth x]	Peptidase_S29	e8cxmx1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
Y	Peptidase_S29	e8cxmY1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
XA [auth w]	Peptidase_S29	e8cxmw1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
X	Peptidase_S29	e8cxmX1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
WA [auth v]	Peptidase_S29	e8cxmv1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
W	Peptidase_S29	e8cxmW1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
VA [auth u]	Peptidase_S29	e8cxmu1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
V	Peptidase_S29	e8cxmV1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
UA [auth t]	Peptidase_S29	e8cxmt1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
U	Peptidase_S29	e8cxmU1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
TA [auth s]	Peptidase_S29	e8cxms1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
T	Peptidase_S29	e8cxmT1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
SA [auth r]	Peptidase_S29	e8cxmr1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
S	Peptidase_S29	e8cxmS1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
RA [auth q]	Peptidase_S29	e8cxmq1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
R	Peptidase_S29	e8cxmR1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
QA [auth p]	Peptidase_S29	e8cxmp1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
Q	Peptidase_S29	e8cxmQ1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
PA [auth o]	Peptidase_S29	e8cxmo1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
P	Peptidase_S29	e8cxmP1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
OA [auth n]	Peptidase_S29	e8cxmn1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
O	Peptidase_S29	e8cxmO1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
NA [auth m]	Peptidase_S29	e8cxmm1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
N	Peptidase_S29	e8cxmN1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
MA [auth l]	Peptidase_S29	e8cxml1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
M	Peptidase_S29	e8cxmM1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
LA [auth A]	Peptidase_S29	e8cxmA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
L	Peptidase_S29	e8cxmL1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
KA [auth k]	Peptidase_S29	e8cxmk1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
K	Peptidase_S29	e8cxmK1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
JA [auth j]	Peptidase_S29	e8cxmj1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
J	Peptidase_S29	e8cxmJ1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
IA [auth i]	Peptidase_S29	e8cxmi1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
I	Peptidase_S29	e8cxmI1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
HA [auth h]	Peptidase_S29	e8cxmh1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
H	Peptidase_S29	e8cxmH1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
GA [auth g]	Peptidase_S29	e8cxmg1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
G	Peptidase_S29	e8cxmG1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
FA [auth f]	Peptidase_S29	e8cxmf1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
F	Peptidase_S29	e8cxmF1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
EA [auth 2]	Peptidase_S29	e8cxm21	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
E	Peptidase_S29	e8cxmE1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
DA [auth e]	Peptidase_S29	e8cxme1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
D	Peptidase_S29	e8cxmD1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
CB [auth 1]	Peptidase_S29	e8cxm11	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
CA [auth d]	Peptidase_S29	e8cxmd1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
C	Peptidase_S29	e8cxmC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
BB [auth 0]	Peptidase_S29	e8cxm01	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
BA [auth c]	Peptidase_S29	e8cxmc1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
B	Peptidase_S29	e8cxmB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
AB [auth z]	Peptidase_S29	e8cxmz1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
AA [auth b]	Peptidase_S29	e8cxmb1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)
A [auth Z]	Peptidase_S29	e8cxmZ1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_S29	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	Flagellin	structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR049365	Flagellin, barrel domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR046358	Flagellin, C-terminal domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR014981	Flagellin D3	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR001029	Flagellin, N-terminal domain	Domain
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], A [auth Z], AA [auth b], AB [auth z], B, BA [auth c], BB [auth 0], C, CA [auth d], CB [auth 1], D, DA [auth e], E, EA [auth 2], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth A], M, MA [auth l], N, NA [auth m], O, OA [auth n], P, PA [auth o], Q, QA [auth p], R, RA [auth q], S, SA [auth r], T, TA [auth s], U, UA [auth t], V, VA [auth u], W, WA [auth v], X, XA [auth w], Y, YA [auth x], Z [auth a], ZA [auth y]	IPR001492	Flagellin	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.