8CYE | pdb_00008cye

Cryo-EM asymmetric reconstruction of the EPEC H6 bacterial flagellar filament Normal Waveform

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V [auth L]	PHF5	e8cyeL1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
U [auth V]	PHF5	e8cyeV1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
T [auth K]	PHF5	e8cyeK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
S [auth U]	PHF5	e8cyeU1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
R [auth J]	PHF5	e8cyeJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
Q [auth T]	PHF5	e8cyeT1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
P [auth I]	PHF5	e8cyeI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
O [auth S]	PHF5	e8cyeS1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
N [auth H]	PHF5	e8cyeH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
M [auth R]	PHF5	e8cyeR1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
L [auth G]	PHF5	e8cyeG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
K [auth Q]	PHF5	e8cyeQ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
J [auth F]	PHF5	e8cyeF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
I [auth P]	PHF5	e8cyeP1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
H [auth E]	PHF5	e8cyeE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
G [auth O]	PHF5	e8cyeO1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
F [auth D]	PHF5	e8cyeD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
E [auth N]	PHF5	e8cyeN1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
D [auth C]	PHF5	e8cyeC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
C [auth M]	PHF5	e8cyeM1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
B [auth A]	PHF5	e8cyeA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)
A [auth B]	PHF5	e8cyeB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	Flagellin	structural molecule activity	-	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	IPR046358	Flagellin, C-terminal domain	Domain
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	IPR001029	Flagellin, N-terminal domain	Domain
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	IPR001492	Flagellin	Family
A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], A [auth B], B [auth A], C [auth M], D [auth C], E [auth N], F [auth D], G [auth O], H [auth E], I [auth P], J [auth F], K [auth Q], L [auth G], M [auth R], N [auth H], O [auth S], P [auth I], Q [auth T], R [auth J], S [auth U], T [auth K], U [auth V], V [auth L]	IPR032826	Flagellin, H7-serospecific domain	Domain