8FZN | pdb_00008fzn

Cryo-EM Structure of AAV2-R404A Variant


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth z]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FB [auth 6]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EB [auth 5]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DB [auth 4]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CB [auth 3]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BB [auth 2]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AB [auth 1]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth z]e8fznz1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ze8fznZ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
YA [auth y]e8fzny1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ye8fznY1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
XA [auth x]e8fznx1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Xe8fznX1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
WA [auth w]e8fznw1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
We8fznW1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
VA [auth v]e8fznv1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ve8fznV1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
UA [auth u]e8fznu1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ue8fznU1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
TA [auth t]e8fznt1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Te8fznT1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
SA [auth s]e8fzns1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Se8fznS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
RA [auth r]e8fznr1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Re8fznR1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
QA [auth q]e8fznq1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Qe8fznQ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
PA [auth p]e8fznp1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Pe8fznP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
OA [auth o]e8fzno1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Oe8fznO1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
NA [auth n]e8fznn1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ne8fznN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
MA [auth m]e8fznm1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Me8fznM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
LA [auth l]e8fznl1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Le8fznL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
KA [auth k]e8fznk1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ke8fznK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
JA [auth j]e8fznj1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Je8fznJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
IA [auth i]e8fzni1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ie8fznI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
HB [auth 8]e8fzn81 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
HA [auth h]e8fznh1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
He8fznH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
GB [auth 7]e8fzn71 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
GA [auth g]e8fzng1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ge8fznG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
FB [auth 6]e8fzn61 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
FA [auth f]e8fznf1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Fe8fznF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
EB [auth 5]e8fzn51 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
EA [auth e]e8fzne1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ee8fznE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
DB [auth 4]e8fzn41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
DA [auth d]e8fznd1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
De8fznD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
CB [auth 3]e8fzn31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
CA [auth c]e8fznc1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ce8fznC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
BB [auth 2]e8fzn21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
BA [auth b]e8fznb1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Be8fznB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
AB [auth 1]e8fzn11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
AA [auth a]e8fzna1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)
Ae8fznA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Cullin_ABF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00740Parvovirus coat protein VP1/VP2 (VP1_2)Parvovirus coat protein VP1/VP2This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily