Crystal structure of the p97-N/D1 hexamer in complex with six p47-UBX domains
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| X | MIF4G | e8hrzX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| W | MIF4G | e8hrzW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| V | MIF4G | e8hrzV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| U | MIF4G | e8hrzU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| T | MIF4G | e8hrzT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| S | MIF4G | e8hrzS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| R | MIF4G | e8hrzR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| Q | MIF4G | e8hrzQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| P | MIF4G | e8hrzP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| O | MIF4G | e8hrzO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| N | MIF4G | e8hrzN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| M | ABC_membrane | e8hrzM01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: ABC_membrane | ECOD (v294.2) |
| L | MIF4G | e8hrzL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| K | MIF4G | e8hrzK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| J | MIF4G | e8hrzJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| I | MIF4G | e8hrzI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| H | MIF4G | e8hrzH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| G | MIF4G | e8hrzG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| F | MIF4G | e8hrzF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| E | MIF4G | e8hrzE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| D | MIF4G | e8hrzD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| C | MIF4G | e8hrzC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| B | MIF4G | e8hrzB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| A | ABC_membrane | e8hrzA01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: ABC_membrane | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00789 | UBX domain (UBX) | UBX domain | This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module [2]. | Domain | |
| PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
| IPR036241 | NSFL1 cofactor p47, SEP domain superfamily | Homologous Superfamily | |
| IPR009060 | UBA-like superfamily | Homologous Superfamily | |
| IPR001012 | UBX domain | Domain | |
| IPR012989 | SEP domain | Domain | |
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR005938 | AAA ATPase, CDC48 family | Family | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
| IPR003338 | CDC48, N-terminal subdomain | Domain | |
| IPR004201 | CDC48, domain 2 | Domain | |
| IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
| IPR050168 | AAA ATPase domain-containing protein | Family | |
| IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |














