8K35 | pdb_00008k35

Structure of the bacteriophage lambda tail tip complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P [auth L]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
Q [auth R]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
R [auth T]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
S [auth U]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
T [auth V]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
U [auth W]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	PF16461	Lambda phage tail tube protein, TTP (Phage_TTP_12)	Lambda phage tail tube protein, TTP	This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is deliv ...	This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube [1]. Members of this family from hexameric ring arrangement [2].	Domain
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	PF05939	Phage minor tail protein (Phage_min_tail)	Phage minor tail protein	-	Family
D [auth J], E [auth G], F [auth N]	PF05100	Phage minor tail protein L (Phage_tail_L)	Phage minor tail protein L	-	Family
A [auth I], B [auth A], C [auth B]	PF24489	Tip attachment protein J second Ig-like domain (Ig_J_second)	Tip attachment protein J second Ig-like domain	This is the second Ig-like domain found in Tip attachment protein J from Escherichia phage lambda. J is a tail fibre protein that attaches the virion to the host receptor LamB, inducing viral DNA ejection [1,2].	Domain
A [auth I], B [auth A], C [auth B]	PF24421	Tip attachment protein J, Ig-like domain (Ig_J)	Tip attachment protein J, Ig-like domain	This domain is found in Tip attachment protein J from Bacteriophage lambda and similar sequences from tailed bacteriophages and prophages from proteobacteria. J plays a role inducing viral DNA ejection. This domain is predicted to adopt an immunoglob ...	This domain is found in Tip attachment protein J from Bacteriophage lambda and similar sequences from tailed bacteriophages and prophages from proteobacteria. J plays a role inducing viral DNA ejection. This domain is predicted to adopt an immunoglobulin-like structure [1,2].	Domain
A [auth I], B [auth A], C [auth B]	PF13550	Putative phage tail protein (Phage-tail_3)	Putative phage tail protein	This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.	Domain
A [auth I], B [auth A], C [auth B]	PF09327	Bacteriophage tail tip fiber protein (Phage_Tail_Tip)	Bacteriophage tail tip fiber protein	-	Family
A [auth I], B [auth A], C [auth B]	PF24801	Tip attachment protein J,FNIII-A domain (FNIII-A_GpJ)	Tip attachment protein J,FNIII-A domain	This domain is found towards the N-terminal end of Tip attachment protein J from the bacteriophage lambda (GpJ) and similar sequences from tailed bacteriophages and bacterial prophages [1]. GpJ is involved in the induction of viral DNA ejection. It a ...	This domain is found towards the N-terminal end of Tip attachment protein J from the bacteriophage lambda (GpJ) and similar sequences from tailed bacteriophages and bacterial prophages [1]. GpJ is involved in the induction of viral DNA ejection. It attaches the virion to the host receptor. This domain shows an Ig-like structure [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth x], N [auth K], O [auth Q]	Tail tip assembly protein I	-	virion assembly viral tail assembly viral process viral life cycle	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
V [auth P], W [auth M], X [auth S]	Tape measure protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail virion component
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	Tail tube protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail, tube virus tail virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	Tail tip protein M	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component
D [auth J], E [auth G], F [auth N]	Tail tip protein L	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component
A [auth I], B [auth A], C [auth B]	Tip attachment protein J	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell symbiont entry into host entry receptor-mediated virion attachment to host cell	virus tail virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M [auth x], N [auth K], O [auth Q]	IPR010654	Bacteriophage lambda tail assembly I	Family
M [auth x], N [auth K], O [auth Q]	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
V [auth P], W [auth M], X [auth S]	IPR043680	Tape measure protein	Family
V [auth P], W [auth M], X [auth S]	IPR006431	Bacteriophage tail tape measure, C-terminal	Domain
V [auth P], W [auth M], X [auth S]	IPR009628	Bacteriophage tail tape measure, N-terminal	Domain
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	IPR003343	Bacterial Ig-like domain, group 2	Domain
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	IPR032494	Lambda phage tail tube protein, N-terminal	Domain
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	IPR010265	Bacteriophage lambda, Tail tip protein M	Family
D [auth J], E [auth G], F [auth N]	IPR006487	Bacteriophage lambda, Tail tip protein L	Family
A [auth I], B [auth A], C [auth B]	IPR055383	Tip attachment protein J, Fn3-1 domain	Domain
A [auth I], B [auth A], C [auth B]	IPR053171	Viral Tip Attachment Protein	Family
A [auth I], B [auth A], C [auth B]	IPR003961	Fibronectin type III	Domain
A [auth I], B [auth A], C [auth B]	IPR021034	Tip attachment protein J, C-terminal receptor binding domain	Domain
A [auth I], B [auth A], C [auth B]	IPR055385	Tip attachment protein J, HDII-ins2 domain	Domain
A [auth I], B [auth A], C [auth B]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth I], B [auth A], C [auth B]	IPR015406	Tip attachment protein J, central straight fiber domain	Domain
A [auth I], B [auth A], C [auth B]	IPR032876	Tip attachment protein J	Domain
A [auth I], B [auth A], C [auth B]	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.