8PV6
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I [auth CK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053081 | 3000433 | SCOP2B (2022-06-29) |
L [auth CN] | SCOP2B Superfamily | Pentein | 8084662 | 3000640 | SCOP2B (2022-06-29) |
AA [auth LB] | SCOP2B Superfamily | Translational proteins | 8106162 | 3000811 | SCOP2B (2022-06-29) |
BA [auth LC] | SCOP2B Superfamily | Ribosomal protein L4 | 8077111 | 3001146 | SCOP2B (2022-06-29) |
CA [auth LD] | SCOP2B Superfamily | Translational machinery components | 8106194 | 3000571 | SCOP2B (2022-06-29) |
HA [auth LJ] | SCOP2B Superfamily | RL5-like | 8077505 | 3001709 | SCOP2B (2022-06-29) |
LA [auth LN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8106168 | 3000210 | SCOP2B (2022-06-29) |
PA [auth LR] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8106186 | 3000890 | SCOP2B (2022-06-29) |
SA [auth LU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8106192 | 3002158 | SCOP2B (2022-06-29) |
TA [auth LV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8106208 | 3000433 | SCOP2B (2022-06-29) |
VA [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8106166 | 3000334 | SCOP2B (2022-06-29) |
ZA [auth Lc] | SCOP2B Superfamily | L30e-like | 8106196 | 3001739 | SCOP2B (2022-06-29) |
BB [auth Le] | SCOP2B Superfamily | Ribosomal protein L32e | 8106182 | 3000982 | SCOP2B (2022-06-29) |
CB [auth Lf] | SCOP2B Superfamily | Translational proteins | 8106190 | 3000811 | SCOP2B (2022-06-29) |
DB [auth Lg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8106200 | 3002203 | SCOP2B (2022-06-29) |
HB [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8106202 | 3002206 | SCOP2B (2022-06-29) |
IB [auth Ll] | SCOP2B Superfamily | Ribosomal protein L39e | 8106282 | 3001756 | SCOP2B (2022-06-29) |
JB [auth Lp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8106178 | 3001320 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth CF] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
E [auth CF] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
F [auth CH] | PF08155 | NOGCT (NUC087) domain (NOGCT) | NOGCT (NUC087) domain | This C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. | Domain |
F [auth CH] | PF17835 | NOG1 N-terminal helical domain (NOG1_N) | NOG1 N-terminal helical domain | This domain is found at the N-terminus of NOG1 GTPase proteins. | Domain |
F [auth CH] | PF06858 | Nucleolar GTP-binding protein 1 (NOG1) (NOG1) | Nucleolar GTP-binding protein 1 (NOG1) | - | Family |
F [auth CH] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
G [auth CI] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
H [auth CJ] | PF06732 | Pescadillo N-terminus (Pescadillo_N) | Pescadillo N-terminus | - | Family |
H [auth CJ] | PF00533 | BRCA1 C Terminus (BRCT) domain (BRCT) | BRCA1 C Terminus (BRCT) domain | - | Family |
I [auth CK] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
J [auth CL] | PF08701 | GNL3L/Grn1 putative GTPase (GN3L_Grn1) | GNL3L/Grn1 putative GTPase | - | Family |
EA [auth LF], K [auth CM] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
EA [auth LF], K [auth CM] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
EA [auth LF], K [auth CM] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
L [auth CN] | PF01912 | eIF-6 family (eIF-6) | eIF-6 family | - | Family |
N [auth CQ] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
O [auth CR] | PF08158 | SDA1, HEAT repeat (SDA1_HEAT) | SDA1, HEAT repeat | - | Repeat |
P [auth CS] | PF12333 | Rix1 complex component involved in 60S ribosome maturation (Ipi1_N) | Rix1 complex component involved in 60S ribosome maturation | - | Family |
Q [auth CT], R [auth CU] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
S [auth CV], T [auth CW] | PF08167 | rRNA processing/ribosome biogenesis (RIX1) | rRNA processing/ribosome biogenesis | - | Repeat |
Z [auth LA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
Z [auth LA] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
BA [auth LC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
BA [auth LC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
CA [auth LD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
CA [auth LD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
CA [auth LD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
DA [auth LE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
DA [auth LE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
FA [auth LG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
GA [auth LH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
HA [auth LJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
HA [auth LJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
HA [auth LJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
IA [auth LK] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
IA [auth LK] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
IA [auth LK] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
JA [auth LL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
KA [auth LM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
LA [auth LN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
MA [auth LO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
NA [auth LP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
NA [auth LP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
OA [auth LQ] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
OA [auth LQ] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
PA [auth LR] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
PA [auth LR] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
QA [auth LS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
SA [auth LU] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
TA [auth LV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
UA [auth LX] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
UA [auth LX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
VA [auth LY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
VA [auth LY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
WA [auth LZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |