Annotations: 8QJ0

Room-temperature Serial Synchrotron Crystallography structure of Spinacia oleracea RuBisCO

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth O]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
D [auth V]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
C [auth U]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
B [auth T]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
A [auth S]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth O]	DNA_topoisoIV	e8qj0O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G [auth N]	DNA_topoisoIV	e8qj0N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth M]	DNA_topoisoIV	e8qj0M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E [auth L]	DNA_topoisoIV	e8qj0L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
D [auth V]	DNA_topoisoIV	e8qj0V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C [auth U]	DNA_topoisoIV	e8qj0U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
B [auth T]	DNA_topoisoIV	e8qj0T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth S]	DNA_topoisoIV	e8qj0S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth L], F [auth M], G [auth N], H [auth O]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain
A [auth S], B [auth T], C [auth U], D [auth V]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth L], F [auth M], G [auth N], H [auth O]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A [auth S], B [auth T], C [auth U], D [auth V]	Ribulose bisphosphate carboxylase small subunit, chloroplastic 2	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
E [auth L], F [auth M], G [auth N], H [auth O]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR033966	RuBisCO	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	Domain
A [auth S], B [auth T], C [auth U], D [auth V]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
A [auth S], B [auth T], C [auth U], D [auth V]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.