8RFJ | pdb_00008rfj

DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K	PF13307	Helicase C-terminal domain (Helicase_C_2)	Helicase C-terminal domain	This domain is found at the C-terminus of DEAD-box helicases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L [auth M]	CRISPR type AFERR-associated protein Csf5	-	-	-
K	ATP-dependent DNA helicase DinG	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides nucleic acid binding	nucleobase-containing compound metabolic process primary metabolic process metabolic process cellular process	-
J	Non-target strand (NTS-) DNA	-	-	-
I	Target strand (TS-)DNA	-	-	-
H	crRNA	-	-	-
G	CRISPR type AFERR-associated protein Csf1	-	-	-
F	CRISPR type AFERR-associated protein Csf3	-	-	-
A, B, C, D, E	CRISPR type AFERR-associated protein Csf2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K	IPR006555	ATP-dependent helicase, C-terminal	Domain
K	IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Domain
K	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
G	IPR017545	CRISPR-associated protein Csf1	Family
A, B, C, D, E	IPR017546	CRISPR type IV/AFERR-associated protein Csf2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.