8VM1 | pdb_00008vm1

Structural Elucidation of the Mesothelin Mucin16 CA125 Interaction

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Mesothelin-like	8104137	3002829	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BACK	e8vm1A01	A: alpha bundles	X: Helical bundle insertion in helicase domains	H: Helical bundle in Hef helicase	T: Helical bundle in Hef helicase	F: BACK	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01390	SEA domain (SEA)	SEA domain	Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Mesothelin, cleaved form,Mucin-16	-	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process	cell surface cellular anatomical structure membrane side of membrane cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell surface cellular anatomical structure membrane side of membrane cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system membrane-enclosed lumen intracellular organelle lumen endoplasmic reticulum lumen organelle lumen endoplasmic reticulum extracellular region Golgi lumen external side of plasma membrane vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular space extracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR026664	Stereocilin-related	Family
A	IPR010335	Mesothelin	Family
A	IPR036364	SEA domain superfamily	Homologous Superfamily
A	IPR028850	Mucin-16	Family
A	IPR000082	SEA domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8WXI7	cholangiocarcinoma pleural disease malignant mesothelioma pancreatic ductal adenocarcinoma cancer Lymphatic Metastasis mesothelial neoplasm adenocarcinoma intrahepatic cholangiocarcinoma granular cell carcinoma malignant pancreatic neoplasm ovarian cancer tubular adenocarcinoma hereditary diffuse gastric adenocarcinoma attention deficit hyperactivity disorder, inattentive type cholangiocarcinoma pleural disease malignant mesothelioma pancreatic ductal adenocarcinoma cancer Lymphatic Metastasis mesothelial neoplasm adenocarcinoma intrahepatic cholangiocarcinoma granular cell carcinoma malignant pancreatic neoplasm ovarian cancer tubular adenocarcinoma hereditary diffuse gastric adenocarcinoma attention deficit hyperactivity disorder, inattentive type ovarian disease bile duct cancer pancreatic intraductal papillary-mucinous neoplasm cystic fibrosis esophageal adenocarcinoma gastric neoplasm mesothelioma non-small cell lung carcinoma benign mesothelioma ovarian neoplasm bone disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cribriform carcinoma psoriasis endometrial carcinoma lung carcinoma nasopharyngeal carcinoma benign neoplasm pancreatic neoplasm cribriform carcinoma of breast endometrioid adenocarcinoma gastric cancer ovarian cancer proteinuria cystic fibrosis malignant pancreatic neoplasm ovarian disease psoriasis lung adenocarcinoma nasopharyngeal carcinoma ovarian neoplasm Malignant neoplasm of ovary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.