8XFV | pdb_00008xfv

Crystal structure of human Golgi resident glutaminyl cyclase in complex with (Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-(piperidin-4-yloxy)indolin-2-one

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K [auth J]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)
A [auth X]	SCOP2B Superfamily	Zn-dependent exopeptidases	8085139	3000662	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]		e8xfvX01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: STL11_N	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	PF04389	Peptidase family M28 (Peptidase_M28)	Peptidase family M28		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	Glutaminyl-peptide cyclotransferase-like protein	aminoacyltransferase activity glutaminyl-peptide cyclotransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	peptidyl-glutamine modification macromolecule modification peptidyl-amino acid modification metabolic process cellular process primary metabolic process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase protein metabolic process macromolecule metabolic process protein modification process	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	IPR007484	Peptidase M28	Domain
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	IPR040234	Glutaminyl-peptide cyclotransferase-like	Family
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	IPR037457	M28 Zn-Peptidase Glutaminyl Cyclase	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], A [auth X], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J]	Pharos: Q9NXS2	chronic obstructive pulmonary disease osteosarcoma heart disease myocardial infarction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.