8XX5

ASFV RNAP M1249L C-tail occupied complex1 (MCOC1)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth E]PF01192RNA polymerase Rpb6 (RNA_pol_Rpb6)RNA polymerase Rpb6- Family
A [auth B]PF04561RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)RNA polymerase Rpb2, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...Domain
A [auth B]PF04560RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)RNA polymerase Rpb2, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...Domain
A [auth B]PF04565RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)RNA polymerase Rpb2, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...Domain
A [auth B]PF04566RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4)RNA polymerase Rpb2, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ...Domain
A [auth B]PF04563RNA polymerase beta subunit (RNA_pol_Rpb2_1)RNA polymerase beta subunit- Family
A [auth B]PF00562RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)RNA polymerase Rpb2, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...Domain
B [auth C]PF13656RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...Domain
C [auth D]PF01191RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C)RNA polymerase Rpb5, C-terminal domainThe assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. Domain
F [auth H]PF01194RNA polymerases N / 8 kDa subunit (RNA_pol_N)RNA polymerases N / 8 kDa subunitDomain
I [auth A]PF00623RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)RNA polymerase Rpb1, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...Domain
I [auth A]PF05000RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)RNA polymerase Rpb1, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...Domain
I [auth A]PF04983RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)RNA polymerase Rpb1, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...Domain
I [auth A]PF04998RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)RNA polymerase Rpb1, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...Domain
I [auth A]PF04997RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)RNA polymerase Rpb1, domain 1RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp dom ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth E]C147L
A [auth B]DNA-directed RNA polymerase subunit beta -
B [auth C]DNA-directed RNA polymerase RPB3-11 homolog
C [auth D]DNA-directed RNA polymerase RPB5 homolog -
D [auth F]D339L- - -
E [auth G]C122R- - -
F [auth H]DNA-directed RNA polymerase RPB10 homolog
G [auth I]M1249L- - -
I [auth A]DNA-directed RNA polymerase subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth E]IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
H [auth E]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
H [auth E]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
H [auth E]IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
A [auth B]IPR007642RNA polymerase Rpb2, domain 2Domain
A [auth B]IPR015712DNA-directed RNA polymerase, subunit 2Family
A [auth B]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
A [auth B]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
A [auth B]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
A [auth B]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
A [auth B]IPR007645RNA polymerase Rpb2, domain 3Domain
A [auth B]IPR007646RNA polymerase Rpb2, domain 4Domain
A [auth B]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
A [auth B]IPR007644RNA polymerase, beta subunit, protrusionDomain
A [auth B]IPR007641RNA polymerase Rpb2, domain 7Domain
B [auth C]IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
B [auth C]IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
B [auth C]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
C [auth D]IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
C [auth D]IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
C [auth D]IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
F [auth H]IPR023580RNA polymerase subunit RPB10Homologous Superfamily
F [auth H]IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
F [auth H]IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family
I [auth A]IPR007066RNA polymerase Rpb1, domain 3Domain
I [auth A]IPR007081RNA polymerase Rpb1, domain 5Domain
I [auth A]IPR007073RNA polymerase Rpb1, domain 7Domain
I [auth A]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
I [auth A]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
I [auth A]IPR007083RNA polymerase Rpb1, domain 4Domain
I [auth A]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
I [auth A]IPR000722RNA polymerase, alpha subunitDomain
I [auth A]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
I [auth A]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
I [auth A]IPR006592RNA polymerase, N-terminalDomain
I [auth A]IPR007080RNA polymerase Rpb1, domain 1Domain