Annotations: 8F2U

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	COMMD1 N-terminal domain-like	8102966	3002773	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	F_UNCLASSIFIED	e8f2uI1	A: alpha duplicates or obligate multimers	X: N-terminal domain of COMMD9 (From Topology)	H: N-terminal domain of COMMD9 (From Topology)	T: N-terminal domain of COMMD9	F: F_UNCLASSIFIED	ECOD (1.6)
I	F_UNCLASSIFIED	e8f2uI2	A: a+b two layers	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain (From Topology)	T: ssDNA-binding transcriptional regulator domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17221	COMMD1 N-terminal domain (COMMD1_N)	COMMD1 N-terminal domain	This helical domain is found at the N-terminus of COMMD1 [1].	Domain
A	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
J	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
J	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
K [auth N]	PF09762	CCDC93 coiled-coil domain (CCDC93_CC)	CCDC93 coiled-coil domain	-	Coiled-coil
L [auth T]	PF05667	CCDC22 protein coiled-coil region (CCDC22_CC)	CCDC22 protein coiled-coil region	-	Coiled-coil
B	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
B	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
C	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
C	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
D	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
D	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
E	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
E	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
F	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
G	PF21672	COMMD2-7/10, HN domain (COMM_HN)	COMMD2-7/10, HN domain	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcri ...	The COMMD (Copper Metabolism Murr1 (Mouse U2af1-rs1 region 1) Domain) proteins are highly conserved in metazoans and unicellular protozoa. There are ten family members that play key roles in intracellular trafficking and in the regulation of transcription. A hallmark of the COMMD family members is a highly conserved C-terminal sequence of 70-80 amino acids called the COMM domain, which has no known structure. This entry represents the N-terminal domain of these proteins, which is referred to as the HN (helical N-terminal) domain, is more variable in sequence across the ten proteins [1,2]. Therefore, this entry includes COMMD2-7/10, while COMMD1 HN domain is represented in Pfam:PF17221, COMMD9 HN domain in Pfam:PF20923. Human (and the mammalian homologues) COMMD6 lacks the HN domain, however, it is present in COMMD6 from other species, such as Xenopus sp. This helical N-terminal domain has a globular architecture and is composed of a six-helix bundle with a meander topology [1,2].	Domain
G	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
H	PF22838	COMMD8, helical N-terminal domain (COMMD8_HN)	COMMD8, helical N-terminal domain	This entry represents the alpha-helical N-terminal domain (HN) of COMMD8, one of the subunits of the CCC complex (Commander complex), which regulates the Retromer-independent retrieval and recycling of hundreds of proteins including integrins and lip ...	This entry represents the alpha-helical N-terminal domain (HN) of COMMD8, one of the subunits of the CCC complex (Commander complex), which regulates the Retromer-independent retrieval and recycling of hundreds of proteins including integrins and lipoprotein receptors [1].	Domain
H	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain
I	PF20923	COMMD9, helical N-terminal domain (COMMD9_HN)	COMMD9, helical N-terminal domain	This domain is found at the N-terminal end of COMM domain-containing protein 9 from humans and similar proteins from vertebrates. COMMD9 contains a conserved and unique motif termed the COMM (copper metabolism gene MURR1, Pfam:PF07258) domain at the ...	This domain is found at the N-terminal end of COMM domain-containing protein 9 from humans and similar proteins from vertebrates. COMMD9 contains a conserved and unique motif termed the COMM (copper metabolism gene MURR1, Pfam:PF07258) domain at the C-terminal, which functions as an interface for protein-protein interactions. This entry represents the N-terminal domain, which shows a globular structure that consists of a six-helix bundle with a meander topology [1,2].	Domain
I	PF07258	COMM domain (COMM_domain)	COMM domain	The leucine-rich, 70-85 amino acid long COMM domain is predicted to form a beta-sheet and an extreme C-terminal alpha- helix. The COMM domain containing proteins are about 200 residues in length and passed the C-terminal COMM domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	COMM domain-containing protein 1	phosphatidylinositol-3,5-bisphosphate binding binding ion binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding molecular function inhibitor activity sodium channel inhibitor activity channel regulator activity transporter inhibitor activity phosphatidylinositol-3,5-bisphosphate binding binding ion binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding molecular function inhibitor activity sodium channel inhibitor activity channel regulator activity transporter inhibitor activity ion channel regulator activity ion channel inhibitor activity molecular function regulator activity sodium channel regulator activity transporter regulator activity channel inhibitor activity phosphatidic acid binding cation binding transition metal ion binding copper ion binding metal ion binding phosphatidylinositol-4,5-bisphosphate binding identical protein binding protein binding protein homodimerization activity protein dimerization activity phosphatidylinositol-3,4-bisphosphate binding phosphatidylinositol-3,4,5-trisphosphate binding	protein localization regulation of localization cellular localization regulation of biological process regulation of cellular process regulation of protein localization biological regulation negative regulation of biological process localization negative regulation of protein localization to cell surface protein localization to cell surface regulation of cellular localization cellular macromolecule localization macromolecule localization negative regulation of cellular process protein localization regulation of localization cellular localization regulation of biological process regulation of cellular process regulation of protein localization biological regulation negative regulation of biological process localization negative regulation of protein localization to cell surface protein localization to cell surface regulation of cellular localization cellular macromolecule localization macromolecule localization negative regulation of cellular process regulation of protein localization to cell surface cellular process negative regulation of protein localization Golgi to plasma membrane transport post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane Golgi vesicle transport plasma membrane to endosome transport establishment of protein localization nitrogen compound transport protein transport regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal negative regulation of DNA-binding transcription factor activity RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process negative regulation of NF-kappaB transcription factor activity nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process negative regulation of molecular function nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity regulation of macromolecule biosynthetic process regulation of DNA-templated transcription inorganic ion homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis copper ion homeostasis monoatomic cation homeostasis catabolic process proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis involved in protein catabolic process regulation of proteolysis modification-dependent macromolecule catabolic process proteolysis proteasomal protein catabolic process protein catabolic process regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process cellular response to stimulus response to stimulus DNA metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress DNA repair monoatomic ion transmembrane transport negative regulation of monoatomic ion transport sodium ion transmembrane transport negative regulation of transport regulation of monoatomic ion transmembrane transport regulation of sodium ion transport metal ion transport negative regulation of transmembrane transport regulation of sodium ion transmembrane transport monoatomic cation transmembrane transport negative regulation of monoatomic ion transmembrane transport monoatomic ion transport negative regulation of cation transmembrane transport monoatomic cation transport regulation of metal ion transport regulation of transport regulation of monoatomic ion transport negative regulation of sodium ion transmembrane transport inorganic ion transmembrane transport inorganic cation transmembrane transport transmembrane transport regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of sodium ion transport sodium ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle recycling endosome endosome membrane membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul2-RING ubiquitin ligase complex transferase complex intracellular protein-containing complex
J	COMM domain-containing protein 10	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
K [auth N]	Coiled-coil domain-containing protein 93	-	Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport intracellular transport endocytic recycling endosomal transport Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport intracellular transport endocytic recycling endosomal transport establishment of localization in cell protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle
L [auth T]	Coiled-coil domain-containing protein 22	protein binding binding cullin family protein binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction cellular process positive regulation of signaling Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization Golgi vesicle transport inorganic ion homeostasis homeostatic process intracellular copper ion homeostasis copper ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process modification-dependent protein catabolic process positive regulation of proteolysis metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction negative regulation of cell communication negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization intracellular transport endocytic recycling endosomal transport establishment of localization in cell	membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle centrosome microtubule organizing center membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B	COMM domain-containing protein 2	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
C	COMM domain-containing protein 3	-	localization transport monoatomic ion transport monoatomic cation transport establishment of localization sodium ion transport metal ion transport	cellular anatomical structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen cellular anatomical structure extracellular region membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen organelle secretory granule secretory vesicle cytoplasm vesicle nucleus
D	COMM domain-containing protein 4	-	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus
E	COMM domain-containing protein 5	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
F	COMM domain-containing protein 6	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication negative regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication negative regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process negative regulation of NF-kappaB transcription factor activity nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process negative regulation of molecular function primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
G	COMM domain-containing protein 7	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of DNA-binding transcription factor activity negative regulation of NF-kappaB transcription factor activity negative regulation of molecular function regulation of molecular function regulation of DNA-binding transcription factor activity cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle
H	COMM domain-containing protein 8	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
I	COMM domain-containing protein 9	-	sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis localization transport monoatomic ion transport monoatomic cation transport establishment of localization sodium ion transport metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system extracellular region membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system extracellular region membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular organelle lumen organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle vesicle nucleus nucleoplasm nuclear lumen vesicle lumen cytoplasmic vesicle lumen secretory granule lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037351	COMM domain-containing protein 1	Family
A	IPR017920	COMM domain	Domain
A	IPR033776	COMMD1 N-terminal domain	Domain
J	IPR037361	COMM domain-containing protein 10	Family
J	IPR017920	COMM domain	Domain
K [auth N]	IPR019159	CCDC93, coiled-coil domain	Domain
K [auth N]	IPR048747	CCDC93, N-terminal domain	Domain
K [auth N]	IPR039116	Coiled-coil domain-containing protein 93	Family
L [auth T]	IPR048348	CCDC22, coiled-coil domain	Domain
L [auth T]	IPR008530	Coiled-coil domain-containing protein 22	Family
L [auth T]	IPR048349	CCDC22, N-terminal domain	Domain
B	IPR037354	COMM domain-containing protein 2	Family
B	IPR017920	COMM domain	Domain
C	IPR037355	COMM domain-containing protein 3	Family
C	IPR017920	COMM domain	Domain
D	IPR047155	COMM domain-containing protein 4/6/7/8	Family
D	IPR037356	COMM domain-containing protein 4	Family
D	IPR017920	COMM domain	Domain
E	IPR037357	COMM domain-containing protein 5	Family
E	IPR017920	COMM domain	Domain
F	IPR047155	COMM domain-containing protein 4/6/7/8	Family
F	IPR017920	COMM domain	Domain
G	IPR047155	COMM domain-containing protein 4/6/7/8	Family
G	IPR017920	COMM domain	Domain
G	IPR037358	COMM domain-containing protein 7	Family
H	IPR047155	COMM domain-containing protein 4/6/7/8	Family
H	IPR047235	COMM domain-containing protein 8	Family
H	IPR017920	COMM domain	Domain
H	IPR055184	COMMD8, helical N-terminal domain	Domain
I	IPR037360	COMM domain-containing protein 9	Family
I	IPR048676	COMMD9, N-terminal domain	Domain
I	IPR017920	COMM domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8N668	allergic disease cirrhosis of liver Copper-Overload Cirrhosis rheumatoid arthritis dog disease hepatitis ovarian cancer
J	Pharos: Q9Y6G5	granulomatosis with polyangiitis ovarian cancer hereditary spastic paraplegia pancreatic intraductal papillary-mucinous carcinoma osteosarcoma tuberculosis
K [auth N]	Pharos: Q567U6	astrocytic tumor malignant ependymoma osteosarcoma primitive neuroectodermal tumor tuberculosis colorectal cancer medulloblastoma ovarian cancer psoriasis invasive ductal breast carcinoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma rheumatoid arthritis
L [auth T]	Pharos: O60826	Ritscher-Schinzel syndrome Ritscher-Schinzel syndrome 2 intellectual disability gastric carcinoma osteosarcoma
B	Pharos: Q86X83	attention deficit hyperactivity disorder, inattentive type diabetes mellitus osteosarcoma atypical teratoid rhabdoid tumor glioblastoma ovarian cancer breast cancer malignant glioma primitive neuroectodermal tumor
C	Pharos: Q9UBI1	invasive ductal breast carcinoma medulloblastoma lung cancer plasma cell myeloma malignant mesothelioma
D	Pharos: Q9H0A8	atypical teratoid rhabdoid tumor malignant glioma ovarian cancer glioblastoma malignant mesothelioma psoriasis large cell medulloblastoma medulloblastoma tuberculosis
E	Pharos: Q9GZQ3	cystic fibrosis pancreatic ductal adenocarcinoma malignant pancreatic neoplasm ovarian cancer
F	Pharos: Q7Z4G1	medulloblastoma ovarian cancer pancreatic ductal adenocarcinoma
G	Pharos: Q86VX2	inflammatory bowel disease ovarian cancer nicotine dependence polycystic ovary syndrome osteosarcoma
H	Pharos: Q9NX08	attention deficit hyperactivity disorder, inattentive type lymphoplasmacytic lymphoma hereditary spastic paraplegia ovarian cancer lung cancer Sjogren syndrome
I	Pharos: Q9P000	allergic rhinitis juvenile idiopathic arthritis ovarian cancer