9A4W | pdb_00009a4w

Integrative model of RPOA-RPOC by crosslinking MS and deep learning

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	RPOC_BACSU	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transition metal ion binding zinc ion binding	response to stimulus response to chemical response to antibiotic RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process response to stimulus response to chemical response to antibiotic RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex DNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex
A	RPOA_BACSU	DNA binding binding nucleic acid binding protein binding protein dimerization activity DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex DNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR007066	RNA polymerase Rpb1, domain 3	Domain
B	IPR007081	RNA polymerase Rpb1, domain 5	Domain
B	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
B	IPR012754	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	Family
B	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
B	IPR007083	RNA polymerase Rpb1, domain 4	Domain
B	IPR000722	RNA polymerase, alpha subunit	Domain
B	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
B	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
B	IPR006592	RNA polymerase, N-terminal	Domain
B	IPR007080	RNA polymerase Rpb1, domain 1	Domain
A	IPR011773	DNA-directed RNA polymerase, alpha subunit	Family
A	IPR011262	DNA-directed RNA polymerase, insert domain	Domain
A	IPR011260	RNA polymerase, alpha subunit, C-terminal	Domain
A	IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Domain
A	IPR036643	DNA-directed RNA polymerase, insert domain superfamily	Homologous Superfamily
A	IPR036603	RNA polymerase, RBP11-like subunit	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.