Annotations: 9C86

Structure of endogenous asymmetric DPYSL2 from rat model of Alzheimer's disease

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	Reovirus_L2_GTase	e9c86B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
C [auth A]	Reovirus_L2_GTase	e9c86A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
B [auth D]	Reovirus_L2_GTase	e9c86D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
A [auth C]	Reovirus_L2_GTase	e9c86C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth D], C [auth A], D [auth B]	PF01979	Amidohydrolase family (Amidohydro_1)	Amidohydrolase family	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D], C [auth A], D [auth B]	Dihydropyrimidinase-related protein 2	hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein binding binding kinase binding enzyme binding protein kinase binding identical protein binding	response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organism development multicellular organismal process spinal cord development central nervous system development anatomical structure development nervous system development animal gross anatomical part developmental process system development import into cell localization response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organism development multicellular organismal process spinal cord development central nervous system development anatomical structure development nervous system development animal gross anatomical part developmental process system development import into cell localization transport endocytosis establishment of localization vesicle localization establishment of organelle localization cellular localization establishment of vesicle localization organelle localization establishment of localization in cell cellular process synaptic vesicle localization synaptic vesicle transport axon extension regulation of growth regulation of cellular process axonogenesis regulation of cellular component size developmental growth cell projection organization neuron projection development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation regulation of biological quality regulation of biological process developmental growth involved in morphogenesis generation of neurons regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell growth cell morphogenesis regulation of axon extension cellular component organization neurogenesis regulation of extent of cell growth cellular component organization or biogenesis regulation of cell size neuron projection extension regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth biological regulation growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development regulation of anatomical structure size organelle organization cytoskeleton organization cellular component biogenesis cellular component assembly regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization regulation of synapse assembly postsynapse organization postsynapse assembly regulation of postsynapse organization regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly regulation of cell differentiation regulation of neuron differentiation response to amine response to nitrogen compound response to amphetamine regulation of neuron projection development regulation of cell projection organization regulation of plasma membrane bounded cell projection organization head development olfactory lobe development forebrain development animal organ development brain development olfactory bulb development telencephalon development regulation of localization nitrogen compound transport regulation of glutamate secretion positive regulation of biological process positive regulation of secretion by cell positive regulation of amine transport secretion by cell regulation of secretion by cell positive regulation of secretion regulation of amino acid transport glutamate secretion positive regulation of cellular process carboxylic acid transport secretion regulation of transport positive regulation of glutamate secretion export from cell regulation of secretion positive regulation of organic acid transport organic acid transport amino acid transport amine transport acidic amino acid transport positive regulation of transport positive regulation of amino acid transport regulation of organic acid transport dicarboxylic acid transport regulation of amine transport response to oxygen-containing compound response to cocaine response to alkaloid	cellular anatomical structure membrane myelin sheath axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus cellular anatomical structure membrane myelin sheath axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon terminal bouton cell junction neuron projection terminus intracellular anatomical structure cytoplasm cytosol somatodendritic compartment dendrite dendritic tree intracellular organelle mitotic spindle cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton growth cone site of polarized growth protein-containing complex glutamatergic synapse intercellular bridge postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse cell body neuronal cell body polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth D], C [auth A], D [auth B]	IPR006680	Amidohydrolase-related	Domain
A [auth C], B [auth D], C [auth A], D [auth B]	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
A [auth C], B [auth D], C [auth A], D [auth B]	IPR050378	Metallo-dependent Hydrolases Superfamily	Family
A [auth C], B [auth D], C [auth A], D [auth B]	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
A [auth C], B [auth D], C [auth A], D [auth B]	IPR011778	D-phenylhydantoinase/dihydropyrimidinase	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9C86 | pdb_00009c86

Structure of endogenous asymmetric DPYSL2 from rat model of Alzheimer's disease

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage