9HMF | pdb_00009hmf

Periplasmic scaffold of the Campylobacter jejuni flagellar motor (alpha carbon trace)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth M]	DUF4465	e9hmfM01	A: alpha bundles	X: Helical bundle insertion in helicase domains	H: Helical bundle in Hef helicase	T: Helical bundle in Hef helicase	F: DUF4465	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Q [auth M], R [auth N]	Chemotaxis protein MotB, putative	-	-	cell periphery cellular anatomical structure plasma membrane membrane
N [auth C], O [auth B], P [auth A]	Lipoprotein, putative	-	-	-
G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J]	PDZ domain-containing protein	-	-	-
F [auth L]	TPR domain protein	-	-	-
E [auth K]	Paralyzed flagella protein PflA	-	-	-
A [auth O], B [auth P], C [auth Q], D [auth R]	Flagellar protein FliL	-	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q [auth M], R [auth N]	IPR006665	OmpA-like domain	Domain
Q [auth M], R [auth N]	IPR025713	Motility protein B-like, N-terminal domain	Domain
Q [auth M], R [auth N]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
Q [auth M], R [auth N]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
N [auth C], O [auth B], P [auth A]	IPR038180	FlgT, N-terminal domain superfamily	Homologous Superfamily
N [auth C], O [auth B], P [auth A]	IPR007293	Flagellar protein FlgP	Family
G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J]	IPR041489	PDZ domain 6	Domain
G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J]	IPR001478	PDZ domain	Domain
G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J]	IPR055911	Domain of unknown function DUF7488	Domain
G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J]	IPR036034	PDZ superfamily	Homologous Superfamily
F [auth L]	IPR051012	CellSynth/LPSAsmb/PSIAsmb	Unknown
F [auth L]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
F [auth L]	IPR019734	Tetratricopeptide repeat	Repeat
E [auth K]	IPR055917	Domain of unknown function DUF7494	Domain
E [auth K]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
E [auth K]	IPR019734	Tetratricopeptide repeat	Repeat
A [auth O], B [auth P], C [auth Q], D [auth R]	IPR005503	Flagellar basal body-associated protein FliL	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.