9JYZ | pdb_00009jyz

portal-tail complex of mature T7

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
LA [auth X]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
WA [auth i]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
VA [auth h]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
UA [auth g]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
TA [auth f]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
SA [auth e]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
RA [auth d]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
NA [auth Z]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
MA [auth Y]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
KA [auth W]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
JA [auth V]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
IA [auth U]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth l]	Beta-Casp	e9jyzl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
YA [auth k]	Beta-Casp	e9jyzk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
XA [auth j]	Beta-Casp	e9jyzj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
IB [auth u]	Beta-Casp	e9jyzu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
HB [auth t]	Beta-Casp	e9jyzt1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
GB [auth s]	Beta-Casp	e9jyzs1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
FB [auth r]	Beta-Casp	e9jyzr1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
EB [auth q]	Beta-Casp	e9jyzq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DB [auth p]	Beta-Casp	e9jyzp1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
CB [auth o]	Beta-Casp	e9jyzo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BB [auth n]	Beta-Casp	e9jyzn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
AB [auth m]	Beta-Casp	e9jyzm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
LA [auth X]	Beta-Casp	e9jyzX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
WA [auth i]	Beta-Casp	e9jyzi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
VA [auth h]	Beta-Casp	e9jyzh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
UA [auth g]	Beta-Casp	e9jyzg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
TA [auth f]	Beta-Casp	e9jyzf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
SA [auth e]	Beta-Casp	e9jyze1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
RA [auth d]	Beta-Casp	e9jyzd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
NA [auth Z]	Beta-Casp	e9jyzZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
MA [auth Y]	Beta-Casp	e9jyzY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
KA [auth W]	Beta-Casp	e9jyzW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
JA [auth V]	Beta-Casp	e9jyzV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
IA [auth U]	Beta-Casp	e9jyzU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	PF12236	Bacteriophage head to tail connecting protein (Head-tail_con)	Bacteriophage head to tail connecting protein	-	Family
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	PF17212	Tail tubular protein (Tube)	Tail tubular protein	-	Family
IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], NA [auth Z], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i]	PF12236	Bacteriophage head to tail connecting protein (Head-tail_con)	Bacteriophage head to tail connecting protein	-	Family
IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], NA [auth Z], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i]	PF17212	Tail tubular protein (Tube)	Tail tubular protein	-	Family
DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], LB [auth x]	PF12236	Bacteriophage head to tail connecting protein (Head-tail_con)	Bacteriophage head to tail connecting protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], D [auth 3], E [auth 4], F [auth 5], G [auth 6], A [auth 0], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	Protein 6.7	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	Tail fiber protein	identical protein binding protein binding binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virus tail, fiber virus tail virion component
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], GB [auth s], HB [auth t], IB [auth u], XA [auth j], YA [auth k], ZA [auth l]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex viral capsid virion component viral portal complex
IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], NA [auth Z], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i]	Tail tubular protein gp11	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component
DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], LB [auth x]	Tail tubular protein gp12	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component
B [auth 1], C [auth 2], JB [auth v], KB [auth w], MB [auth y], B [auth 1], C [auth 2], JB [auth v], KB [auth w], MB [auth y], NB [auth z]	Protein 7.3	-	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], D [auth 3], E [auth 4], F [auth 5], G [auth 6], A [auth 0], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	IPR020134	Bacteriophage T7-like, protein 6.7	Family
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR022246	Bacteriophage T7, Gp17, C-terminal	Domain
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR005604	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Domain
AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], AA [auth M], BA [auth N], CA [auth O], K [auth A], OA [auth a], P [auth B], PA [auth b], Q [auth C], QA [auth c], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR048388	Tail fibre protein gp37, trimerization region	Domain
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], GB [auth s], HB [auth t], IB [auth u], XA [auth j], YA [auth k], ZA [auth l]	IPR038995	Portal protein, Caudovirales	Family
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], GB [auth s], HB [auth t], IB [auth u], XA [auth j], YA [auth k], ZA [auth l]	IPR020991	Head-to-tail connector protein, podovirus-type	Family
IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], IA [auth U], JA [auth V], KA [auth W], LA [auth X], MA [auth Y], NA [auth Z], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i]	IPR033767	Tail tubular protein Gp11	Family
DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], LB [auth x]	IPR058003	Tail tubular protein gp12	Family
B [auth 1], C [auth 2], JB [auth v], KB [auth w], MB [auth y], B [auth 1], C [auth 2], JB [auth v], KB [auth w], MB [auth y], NB [auth z]	IPR024281	Bacteriophage T7-like virion assembly protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.