9NU2 | pdb_00009nu2

Uromodulin filament lattice in the straight arrangement from human urine

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	Cofilin_ADF	e9nu2C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
B [auth A]	Cofilin_ADF	e9nu2A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
C [auth B]	Cofilin_ADF	e9nu2B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
D	Cofilin_ADF	e9nu2D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
E	Cofilin_ADF	e9nu2E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
F	Cofilin_ADF	e9nu2F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
G [auth K]	Cofilin_ADF	e9nu2K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
H [auth G]	Cofilin_ADF	e9nu2G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
I	Cofilin_ADF	e9nu2I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
J [auth M]	Cofilin_ADF	e9nu2M1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
K [auth O]	Cofilin_ADF	e9nu2O1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
L [auth Q]	Cofilin_ADF	e9nu2Q1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
M [auth L]	Cofilin_ADF	e9nu2L1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
O [auth J]	Cofilin_ADF	e9nu2J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
Q [auth P]	Cofilin_ADF	e9nu2P1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
R	Cofilin_ADF	e9nu2R1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
P [auth N]	Cofilin_ADF	e9nu2N1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
N [auth H]	Cofilin_ADF	e9nu2H1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	PF23344	ZP-N domain (ZP-N)	ZP-N domain	This entry represents the N-terminal structural domain of the zona pellucida domain as defined by sequence.	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	PF23283	Uromodulin-like, D8C domain (D8C_UMOD)	Uromodulin-like, D8C domain	This domain, described as D8C domain (cysteine-rich domain), is found in human Uromodulin (UMOD) and similar animal proteins. UMOD functions in biogenesis and organization of the apical membrane of epithelial cells of the thick ascending limb of Henl ...	This domain, described as D8C domain (cysteine-rich domain), is found in human Uromodulin (UMOD) and similar animal proteins. UMOD functions in biogenesis and organization of the apical membrane of epithelial cells of the thick ascending limb of Henle's loop and may serve as a receptor for binding and endocytosis of cytokines (IL-1, IL-2) and TNF. This domain adopts a predominantly beta structure [3].	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	PF00100	ZP-C domain (Zona_pellucida)	ZP-C domain	This entry represents the ZP-C domain that is the C-terminal structural domain that composes the zona pellucida domain that was originally defined by sequence.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	Uromodulin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein-containing complex binding immunoglobulin binding IgG binding	chemical homeostasis homeostatic process monoatomic ion homeostasis localization macromolecule localization protein localization to extracellular region heterophilic cell-cell adhesion cell adhesion cell-cell adhesion cellular process biosynthetic process metabolic process macromolecule metabolic process gene expression chemical homeostasis homeostatic process monoatomic ion homeostasis localization macromolecule localization protein localization to extracellular region heterophilic cell-cell adhesion cell adhesion cell-cell adhesion cellular process biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process multicellular organismal process metanephric thick ascending limb development kidney epithelium development metanephric epithelium development nephron tubule development metanephric distal tubule development renal system development multicellular organism development metanephros development anatomical structure development renal tubule development nephron development metanephric nephron epithelium development nephron epithelium development system development developmental process epithelium development tube development metanephric nephron tubule development animal organ development tissue development distal tubule development metanephric tubule development thick ascending limb development animal gross anatomical part developmental process kidney development negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process regulation of cell population proliferation negative regulation of cellular process biological regulation negative regulation of biological process leukocyte migration immune system process myeloid leukocyte migration cell migration neutrophil migration cell motility granulocyte migration leukocyte cell-cell adhesion response to stimulus defense response response to stress cellular defense response biological process involved in interspecies interaction between organisms response to other organism response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to external biotic stimulus metanephric distal convoluted tubule development distal convoluted tubule development loop of Henle development metanephric loop of Henle development metanephric ascending thin limb development ascending thin limb development immune response defense response to symbiont antibacterial innate immune response defense response to other organism innate immune response	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle intracellular anatomical structure cytoskeleton spindle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle intracellular anatomical structure cytoskeleton spindle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cell surface basal part of cell basal plasma membrane basolateral plasma membrane extrinsic component of membrane microtubule organizing center spindle pole body mitotic spindle pole body ciliary membrane bounding membrane of organelle organelle membrane cell projection membrane Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen organelle lumen cytoplasm endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR024731	NELL2-like, EGF domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR042235	Zona pellucida, ZP-C domain	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR057774	UMOD/GP2/OIT3-like, D8C domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR055356	ZP-N domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR055355	ZP-C domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR000742	EGF-like domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR017977	Zona pellucida domain, conserved site	Conserved Site
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR001881	EGF-like calcium-binding domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR048290	Zona pellucida domain, chordate-type	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR001507	Zona pellucida domain	Domain
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B [auth A], C [auth B], D, E, A [auth C], B [auth A], C [auth B], D, E, F, G [auth K], H [auth G], I, J [auth M], K [auth O], L [auth Q], M [auth L], N [auth H], O [auth J], P [auth N], Q [auth P], R	: P07911	glomerulocystic kidney disease with hyperuricemia and isosthenuria kidney disease familial juvenile hyperuricemic nephropathy hypertensive disorder medullary cystic kidney disease 2 familial juvenile hyperuricemic nephropathy type 1 nephronophthisis chronic kidney disease Cystic Kidney Diseases nephrolithiasis congenital anomaly of kidney and urinary tract

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.