9SKA | pdb_00009ska

Model of M. pneumoniae 30S iT-TC (flexible)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 5]	16S ribosomal RNA	-	-	-
B [auth 6]	Initiator fMet-tRNAfMet	-	-	-
C [auth 7], G [auth AA]	DNA-directed RNA polymerase subunit alpha	DNA binding binding nucleic acid binding protein binding protein dimerization activity DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
D [auth 8]	DNA-directed RNA polymerase subunit beta	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-
E [auth 9]	Probable DNA-directed RNA polymerase subunit delta	DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-
F [auth A]	Small ribosomal subunit protein uS2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
H [auth AB]	Transcription termination/antitermination protein NusA	transcription regulator activity DNA-binding transcription factor activity RNA binding binding nucleic acid binding	negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process cellular component disassembly negative regulation of DNA-templated transcription regulation of biological process negative regulation of cellular component organization negative regulation of metabolic process primary metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process regulation of termination of DNA-templated transcription regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of cellular component organization transcription antitermination positive regulation of biological process RNA metabolic process DNA-templated transcription termination RNA biosynthetic process cellular component organization nucleic acid biosynthetic process positive regulation of biosynthetic process negative regulation of protein-containing complex disassembly negative regulation of cellular process cellular component organization or biogenesis positive regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process protein-containing complex organization biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression negative regulation of biosynthetic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
I [auth AC]	DNA chain A	-	-	-
J [auth AD]	DNA chain B	-	-	-
K [auth AE]	Transcription termination/antitermination protein NusG	-	negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process cellular component disassembly negative regulation of DNA-templated transcription regulation of biological process negative regulation of cellular component organization negative regulation of metabolic process primary metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process regulation of termination of DNA-templated transcription regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of cellular component organization transcription antitermination positive regulation of biological process RNA metabolic process DNA-templated transcription termination RNA biosynthetic process cellular component organization nucleic acid biosynthetic process positive regulation of biosynthetic process negative regulation of protein-containing complex disassembly negative regulation of cellular process cellular component organization or biogenesis positive regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process protein-containing complex organization biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression negative regulation of biosynthetic process cellular process DNA-templated transcription elongation regulation of DNA-templated transcription elongation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
L [auth B]	Small ribosomal subunit protein uS3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
M [auth C]	Small ribosomal subunit protein uS4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
N [auth D]	Small ribosomal subunit protein uS5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
O [auth E]	Small ribosomal subunit protein bS6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
P [auth F]	Small ribosomal subunit protein uS7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
Q [auth G]	Small ribosomal subunit protein uS8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
R [auth H]	Small ribosomal subunit protein uS9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
S [auth I]	Small ribosomal subunit protein uS10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
T [auth J]	Small ribosomal subunit protein uS11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
U [auth K]	Small ribosomal subunit protein uS12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
V [auth L]	Small ribosomal subunit protein uS13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
W [auth M]	Small ribosomal subunit protein uS14	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
X [auth N]	Small ribosomal subunit protein uS15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
Z [auth P]	Small ribosomal subunit protein uS17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
AA [auth Q]	Small ribosomal subunit protein bS18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
BA [auth R]	Small ribosomal subunit protein uS19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
CA [auth S]	Small ribosomal subunit protein bS20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
DA [auth T]	Small ribosomal subunit protein bS21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
EA [auth U]	Translation initiation factor IF-1	translation factor activity translation initiation factor activity RNA binding binding rRNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
FA [auth V]	Translation initiation factor IF-3	translation factor activity translation initiation factor activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	cellular component organization cellular component disassembly organelle organization organelle disassembly ribosome disassembly cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane
GA [auth Z]	DNA-directed RNA polymerase subunit beta'	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transition metal ion binding zinc ion binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-
Y [auth O]	Small ribosomal subunit protein bS16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth 7], G [auth AA]	IPR011773	DNA-directed RNA polymerase, alpha subunit	Family
C [auth 7], G [auth AA]	IPR011262	DNA-directed RNA polymerase, insert domain	Domain
C [auth 7], G [auth AA]	IPR011260	RNA polymerase, alpha subunit, C-terminal	Domain
C [auth 7], G [auth AA]	IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Domain
C [auth 7], G [auth AA]	IPR036643	DNA-directed RNA polymerase, insert domain superfamily	Homologous Superfamily
C [auth 7], G [auth AA]	IPR036603	RNA polymerase, RBP11-like subunit	Homologous Superfamily
D [auth 8]	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
D [auth 8]	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
D [auth 8]	IPR042107	DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily	Homologous Superfamily
D [auth 8]	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
D [auth 8]	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
D [auth 8]	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
D [auth 8]	IPR007645	RNA polymerase Rpb2, domain 3	Domain
D [auth 8]	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
D [auth 8]	IPR019462	DNA-directed RNA polymerase, beta subunit, external 1 domain	Domain
D [auth 8]	IPR010243	DNA-directed RNA polymerase beta subunit, bacterial-type	Family
D [auth 8]	IPR007644	RNA polymerase, beta subunit, protrusion	Domain
D [auth 8]	IPR007641	RNA polymerase Rpb2, domain 7	Domain
E [auth 9]	IPR029757	DNA-directed RNA polymerase subunit delta	Family
E [auth 9]	IPR038087	DNA-directed RNA polymerase subunit delta, N-terminal domain superfamily	Homologous Superfamily
E [auth 9]	IPR007759	ASXL, HARE-HTH domain	Domain
F [auth A]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
F [auth A]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
F [auth A]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
F [auth A]	IPR001865	Small ribosomal subunit protein uS2	Family
H [auth AB]	IPR036555	NusA, N-terminal domain superfamily	Homologous Superfamily
H [auth AB]	IPR003029	S1 domain	Domain
H [auth AB]	IPR013735	Transcription factor NusA, N-terminal	Domain
H [auth AB]	IPR059158	NusA, second KH domain, bacteria	Domain
H [auth AB]	IPR059258	Transcription factor NusA, bacteria	Family
H [auth AB]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
H [auth AB]	IPR004087	K Homology domain	Domain
H [auth AB]	IPR010213	Transcription factor NusA	Domain
H [auth AB]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
H [auth AB]	IPR025249	Transcription factor NusA, first KH domain	Domain
H [auth AB]	IPR030842	Transcription factor NusA, prokaryotes	Family
H [auth AB]	IPR058582	NusA-like, second KH domain	Domain
H [auth AB]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
K [auth AE]	IPR043425	NusG-like	Family
K [auth AE]	IPR001062	Transcription antitermination protein, NusG	Family
K [auth AE]	IPR036735	NusG, N-terminal domain superfamily	Homologous Superfamily
K [auth AE]	IPR010216	Transcription antitermination protein, NusG, mycoplasma-related	Family
K [auth AE]	IPR006645	NusG-like, N-terminal	Domain
K [auth AE]	IPR047050	NusG, N-terminal	Domain
L [auth B]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
L [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
L [auth B]	IPR057258	Small ribosomal subunit protein uS3	Family
L [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
L [auth B]	IPR004087	K Homology domain	Domain
L [auth B]	IPR004044	K Homology domain, type 2	Domain
L [auth B]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
L [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
L [auth B]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
M [auth C]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
M [auth C]	IPR002942	RNA-binding S4 domain	Domain
M [auth C]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
M [auth C]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
M [auth C]	IPR022801	Small ribosomal subunit protein uS4	Family
M [auth C]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
N [auth D]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
N [auth D]	IPR000851	Small ribosomal subunit protein uS5	Family
N [auth D]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
N [auth D]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
N [auth D]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
N [auth D]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
N [auth D]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
O [auth E]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
O [auth E]	IPR000529	Small ribosomal subunit protein bS6	Family
O [auth E]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
O [auth E]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
O [auth E]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
P [auth F]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
P [auth F]	IPR000235	Small ribosomal subunit protein uS7	Family
P [auth F]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
P [auth F]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
P [auth F]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
Q [auth G]	IPR000630	Small ribosomal subunit protein uS8	Family
Q [auth G]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
Q [auth G]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
R [auth H]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
R [auth H]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
R [auth H]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
R [auth H]	IPR000754	Small ribosomal subunit protein uS9	Family
R [auth H]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
S [auth I]	IPR001848	Small ribosomal subunit protein uS10	Family
S [auth I]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
S [auth I]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
S [auth I]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
T [auth J]	IPR001971	Small ribosomal subunit protein uS11	Family
T [auth J]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
T [auth J]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
T [auth J]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
U [auth K]	IPR006032	Small ribosomal subunit protein uS12	Family
U [auth K]	IPR005679	Ribosomal protein uS12, bacteria	Family
U [auth K]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
V [auth L]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
V [auth L]	IPR001892	Small ribosomal subunit protein uS13	Family
V [auth L]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
V [auth L]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
V [auth L]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
W [auth M]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
W [auth M]	IPR001209	Small ribosomal subunit protein uS14	Family
W [auth M]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
W [auth M]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
X [auth N]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
X [auth N]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
X [auth N]	IPR000589	Small ribosomal subunit protein uS15	Family
Z [auth P]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
Z [auth P]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
Z [auth P]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
Z [auth P]	IPR000266	Small ribosomal subunit protein uS17	Family
AA [auth Q]	IPR001648	Small ribosomal subunit protein bS18	Family
AA [auth Q]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
AA [auth Q]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
BA [auth R]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
BA [auth R]	IPR002222	Small ribosomal subunit protein uS19	Family
BA [auth R]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
BA [auth R]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
CA [auth S]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
CA [auth S]	IPR002583	Small ribosomal subunit protein bS20	Family
DA [auth T]	IPR001911	Small ribosomal subunit protein bS21	Family
EA [auth U]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
EA [auth U]	IPR006196	RNA-binding domain, S1, IF1 type	Domain
EA [auth U]	IPR004368	Translation initiation factor IF-1	Family
FA [auth V]	IPR019815	Translation initiation factor 3, C-terminal	Domain
FA [auth V]	IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Homologous Superfamily
FA [auth V]	IPR001288	Translation initiation factor 3	Family
FA [auth V]	IPR019814	Translation initiation factor 3, N-terminal	Domain
FA [auth V]	IPR019813	Translation initiation factor 3, conserved site	Conserved Site
FA [auth V]	IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Homologous Superfamily
GA [auth Z]	IPR007066	RNA polymerase Rpb1, domain 3	Domain
GA [auth Z]	IPR007081	RNA polymerase Rpb1, domain 5	Domain
GA [auth Z]	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
GA [auth Z]	IPR012754	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	Family
GA [auth Z]	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
GA [auth Z]	IPR007083	RNA polymerase Rpb1, domain 4	Domain
GA [auth Z]	IPR000722	RNA polymerase, alpha subunit	Domain
GA [auth Z]	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
GA [auth Z]	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
GA [auth Z]	IPR006592	RNA polymerase, N-terminal	Domain
GA [auth Z]	IPR007080	RNA polymerase Rpb1, domain 1	Domain
Y [auth O]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
Y [auth O]	IPR000307	Small ribosomal subunit protein bS16	Family