Annotations: 9H1L

Methyl-coenzyme M reductase activation complex binding to the A2 component after incubation with ATP

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	Beta-Casp	e9h1lK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth F]	Beta-Casp	e9h1lF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth C]	Beta-Casp	e9h1lC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth D]	Beta-Casp	e9h1lD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth E]	Beta-Casp	e9h1lE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth B]	Beta-Casp	e9h1lB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth A]	Beta-Casp	e9h1lA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L	DUF2098 domain-containing protein	-	-	-
K	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	catabolic process organic phosphonate metabolic process oxoacid metabolic process organic phosphonate catabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	-
J [auth I]	Methyl-coenzyme M reductase operon protein C	-	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	-
I [auth H]	Methanogenesis marker protein 7	-	-	-
H [auth G]	Methanogenesis marker protein 17	-	-	-
F [auth C], G [auth F]	Methyl-coenzyme M reductase subunit alpha	coenzyme-B sulfoethylthiotransferase activity alkylthioltransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	cellular anatomical structure intracellular anatomical structure cytoplasm
D [auth E], E [auth D]	Methyl-coenzyme M reductase subunit beta	coenzyme-B sulfoethylthiotransferase activity alkylthioltransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	cellular anatomical structure intracellular anatomical structure cytoplasm
B [auth A], C [auth B]	Methyl-coenzyme M reductase subunit gamma	coenzyme-B sulfoethylthiotransferase activity alkylthioltransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	cellular anatomical structure intracellular anatomical structure cytoplasm
A [auth J]	UPF0288 protein MmarC6_0796	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L	IPR017099	Uncharacterised conserved protein UCP037053	Family
L	IPR019209	Protein of unknown function DUF2098	Family
K	IPR003593	AAA+ ATPase domain	Domain
K	IPR017871	ABC transporter-like, conserved site	Conserved Site
K	IPR017669	Methyl coenzyme M reductase system, component A2	Family
K	IPR003439	ABC transporter-like, ATP-binding domain	Domain
K	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
J [auth I]	IPR007687	Methyl-coenzyme M reductase, protein C	Family
J [auth I]	IPR026327	Methyl-coenzyme M reductase, protein C-like	Family
I [auth H]	IPR011312	Methanogenesis marker 7 protein	Family
I [auth H]	IPR026327	Methyl-coenzyme M reductase, protein C-like	Family
H [auth G]	IPR016762	Methanogenesis marker 17 protein	Family
F [auth C], G [auth F]	IPR009047	Methyl-coenzyme M reductase, alpha subunit, C-terminal	Domain
F [auth C], G [auth F]	IPR009024	Methyl-coenzyme M reductase, ferredoxin-like fold	Homologous Superfamily
F [auth C], G [auth F]	IPR003183	Methyl-coenzyme M reductase, alpha subunit, N-terminal	Domain
F [auth C], G [auth F]	IPR008924	Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal	Homologous Superfamily
F [auth C], G [auth F]	IPR016212	Methyl coenzyme M reductase, alpha subunit	Family
F [auth C], G [auth F]	IPR015823	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 2	Homologous Superfamily
F [auth C], G [auth F]	IPR015811	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 1	Homologous Superfamily
D [auth E], E [auth D]	IPR009024	Methyl-coenzyme M reductase, ferredoxin-like fold	Homologous Superfamily
D [auth E], E [auth D]	IPR022680	Methyl-coenzyme M reductase, beta subunit, N-terminal	Domain
D [auth E], E [auth D]	IPR008924	Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal	Homologous Superfamily
D [auth E], E [auth D]	IPR015823	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 2	Homologous Superfamily
D [auth E], E [auth D]	IPR003179	Methyl-coenzyme M reductase, beta subunit	Family
D [auth E], E [auth D]	IPR022679	Methyl-coenzyme M reductase, beta subunit, C-terminal	Domain
B [auth A], C [auth B]	IPR009024	Methyl-coenzyme M reductase, ferredoxin-like fold	Homologous Superfamily
B [auth A], C [auth B]	IPR003178	Methyl-coenzyme M reductase, gamma subunit	Family
B [auth A], C [auth B]	IPR036994	Methyl-coenzyme M reductase, gamma subunit superfamily	Homologous Superfamily
A [auth J]	IPR058492	UPF0288-like, C-terminal domain	Domain
A [auth J]	IPR016466	Methanogenesis marker 3 protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
F [auth C], G [auth F]	AGM	Parent Component: ARG : AA0272 : 5-methyl-L-arginine MOD:00277
F [auth C], G [auth F]	GL3	Parent Component: GLY : AA0272 , AA0265 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623
F [auth C], G [auth F]	MGN	Parent Component: GLN : AA0272 , AA0265 , AA0273 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 2-methyl-L-glutamine MOD:00278
F [auth C], G [auth F]	MHS	Parent Component: HIS : AA0272 , AA0265 , AA0273 , AA0073 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 2-methyl-L-glutamine MOD:00278 , 3'-methyl-L-histidine MOD:00082
F [auth C], G [auth F]	SMC	Parent Component: CYS : AA0272 , AA0265 , AA0273 , AA0073 , AA0234 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 2-methyl-L-glutamine MOD:00278 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9H1L | pdb_00009h1l

Methyl-coenzyme M reductase activation complex binding to the A2 component after incubation with ATP

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation