AF_AFA5PLE8F1

Computed structure model of Caudal type homeobox 1 b

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Caudal type homeobox 1 b	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding chromatin binding promoter-specific chromatin binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development cellular developmental process cell differentiation cellular process head development forebrain development developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development cellular developmental process cell differentiation cellular process head development forebrain development brain development pattern specification process diencephalon development nervous system development determination of left/right asymmetry in nervous system regionalization central nervous system development determination of bilateral symmetry determination of left/right asymmetry in diencephalon determination of left/right symmetry left/right pattern formation specification of symmetry epithelium development digestive system development intestinal epithelial cell differentiation tube development tissue development digestive tract development epithelial cell differentiation columnar/cuboidal epithelial cell differentiation anterior/posterior axis specification anterior/posterior pattern specification axis specification pancreas development cell population proliferation epithelial cell proliferation anatomical structure morphogenesis tube morphogenesis digestive tract morphogenesis regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process formation of primary germ layer embryonic morphogenesis embryo development gastrulation endoderm development anatomical structure formation involved in morphogenesis endoderm formation transcription by RNA polymerase II regulation of transcription by RNA polymerase II embryonic pattern specification	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR017970	Homeobox, conserved site	Conserved Site
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR006820	Caudal-like activation domain	Domain
A	IPR000047	Helix-turn-helix motif	Conserved Site
A	IPR020479	Homeodomain, metazoa	Domain
A	IPR001356	Homeodomain	Domain
A	IPR047152	Caudal homeobox	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.