1EJP
SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC DOMAIN
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2-4mM Syndecan-4 peptide ; 50mM phosphate buffer; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate | 7.4 | 1 atm | 298 | |
2 | DQF-COSY | 2-4mM Syndecan-4 peptide ; 50mM phosphate buffer; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate | 7.4 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures are based on a total of 306 restraints, 246 are intramonomer NOE-derived distance constraints, 48 intermonomer NOE-derived distance restraints and 12 dihedral angle restraints. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 90 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.5 | Bruker |
2 | processing | XwinNMR | 2.5 | Bruker |
3 | data analysis | Sparky | 3.6 | James, T. |
4 | refinement | X-PLOR | 3.851 | Brunger, A.T |