1FU9
SOLUTION STRUCTURE OF THE NINTH ZINC-FINGER DOMAIN OF THE U-SHAPED TRANSCRIPTION FACTOR
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.4mM U-shaped Finger 9; 0.6mM ZnSO4; 0.6mM TCEP; 95% H2O, 5% D2O | 95% H2O/5% D2O | 0.6mM ZnSO4 | 5.0 | ambient | 293 | |
2 | HNHA | 0.2mM U-shaped Finger 9 U-15N; 0.3mM ZnSO4; 0.3mM TCEP; 95% D2O, 5% H2O | 95% H2O/5% D2O | 0.3mM ZnSO4 | 5.0 | ambient | 293 | |
3 | HNHB | 0.2mM U-shaped Finger 9 U-15N; 0.3mM ZnSO4; 0.3mM TCEP; 95% D2O, 5% H2O | 95% H2O/5% D2O | 0.3mM ZnSO4 | 5.0 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics simulated annealing torsion angle dynamics | The structures are based on a total of 535 restraints, 506 are NOE-derived distance constraints, 29 are dihedral angle restraints | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using a combination of 2D homonuclear and 3D 15N-heteronuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.1 | Bruker |
2 | data analysis | XEASY | 1.3.13 | Bartels et al |
3 | structure solution | DYANA | 1.5 | Guntert et al |
4 | refinement | CNS | 0.5 | Brunger et al |