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STRUCTURE OF THE CHROMODOMAIN FROM MOUSE HP1beta IN COMPLEX WITH THE LYSINE 9-METHYL HISTONE H3 N-TERMINAL PEPTIDE, NMR, 25 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D | 150 mM NACL, 20 mM PHOSPHATE BUFFER, 10% D2O | 5.5 | 1 atm | 298 | |||
2 | 3D 1H | 150 mM NACL, 20 mM PHOSPHATE BUFFER, 10% D2O | 5.5 | 1 atm | 298 | |||
3 | 15N | 150 mM NACL, 20 mM PHOSPHATE BUFFER, 10% D2O | 5.5 | 1 atm | 298 | |||
4 | 13C | 150 mM NACL, 20 mM PHOSPHATE BUFFER, 10% D2O | 5.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | ARIA1.0 |
NMR Ensemble Information | |
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Conformer Selection Criteria | LOWEST ENERGY OF 75 CONVERGED STRUCTURES |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE 2D AND 3D NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN. FOR PROTEIN ASSIGMENTS THE SAMPLE CONTAINED AN EXCESS OF 1.2 FOLD OF UNLABELLED PEPTIDE. THE PEPTIDE WAS ASSIGNED USING 13C, 15N REJECTED NOESY AND TOCSY EXPERIMENTS ON A SAMPLE OF EXCESS 13C, 15N LABELLED PROTEIN TO UNLABELLED PEPTIDE. THE METHYL GROUP RESONANCES OF LYSINE 4 AND 9 OF THE PEPTIDE WERE CONFIRMED WITH THE HELP OF A 13C METHYL-SELECTIVELY LABELLED SAMPLE MIXED WITH UNLABELLED PROTEIN. INTERMOLECULAR CONTACTS WERE OBTAINED FROM A 13C/15N X-FILTERED NOESY SPECTRUM AND A 3D J(CH,NH)- SEPARATED NOESY SPECTRUM |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | ARIA1.0 | J.P.LINGE,S.I.O'DONOGHUE,M.NILGES | |
2 | structure solution | AZARA | ||
3 | structure solution | ANZIG | ||
4 | structure solution | ARIA1.0 | ||
5 | structure solution | CNS1.0 |