1MYQ
An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 mM DNA; 10 mM sodium phosphate buffer (pH 6.5); 100 mM KCl; | 95% H2O/5% D2O | 100 mM KCl | 6.5 | ambient | 274 | |
2 | 2D NOESY | 2 mM DNA; 10 mM sodium phosphate buffer (pH 6.5); | 100% D2O | 100 mM KCl | 6.5 | ambient | 298 | |
3 | 2D TOCSY | 2 mM DNA; 10 mM sodium phosphate buffer (pH 6.5); | 100% D2O | 100 mM KCl | 6.5 | ambient | 298 | |
4 | DQF-COSY | 2 mM DNA; 10 mM sodium phosphate buffer (pH 6.5); | 100% D2O | 100 mM KCl | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | Brunger |
2 | refinement | X-PLOR | 3.851 | Brunger |