1O53
Solution structure of the N-terminal membrane anchor of E. coli enzyme IIA(Glucose)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY, TOCSY, DQF-COSY | natural abundance synthetic peptide 5 mM peptide and 50 mM dihexanoyl phosphatidylglycerol | 90% H2O and 10% D2O | no buffer | 5.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures are based on 146 distances derived from the NOESY spectra. No dihedral angles or hydrogen-bond restraints were applied. | NMRPipe/nmrDraw |
NMR Ensemble Information | |
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Conformer Selection Criteria | No NOE violations greater than 0.20 A; rms difference for bond deviations from ideality less than 0.01 A; rms difference for angle deviations from ideality less than 2 degrees; Structures with the lowerest energies in the ensemble; Structures most resemble the average structure. |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (most resemble the average structure.) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear NMR techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data processing | NMRPipe/nmrDraw | 2.1 | Delaglio, F. |
2 | noe picking | PIPP | 1.0 | Garrett, D. |
3 | structural calculations | XPLOR-NIH | 1.06 | Schwieters, C.D., Kuszewski, J., Tjandra, N, Clore, G.M. |
4 | structural analysis and viewing | MOLMOL | 2K.1 | Koradi, R. |