X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.8292PEG 6000, tert-butanol, sodium acetate, potassium chloride, magnesium chloride, glycerol, MOPS, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
3.968

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 162.477α = 90
b = 75.617β = 108.82
c = 151.651γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-02-24MSINGLE WAVELENGTH
21100CCDMARRESEARCH2004-02-24
31100IMAGE PLATEMARRESEARCH2004-03-27
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.952BESSY14.1
2SYNCHROTRONBESSY BEAMLINE 14.10.952BESSY14.1
3SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.8116EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.95099.90.110.1123.97.33889538895-380
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.92.9799.80.80.82.15.72554

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.9503889537727115399.880.247460.247460.246020.29348RANDOM74.729
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.34-3.836.38-7.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.537
r_dihedral_angle_3_deg19.904
r_dihedral_angle_4_deg19.061
r_dihedral_angle_1_deg7.662
r_scangle_it2.334
r_angle_refined_deg1.571
r_scbond_it1.353
r_mcangle_it1.139
r_angle_other_deg0.878
r_mcbond_it0.607
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.537
r_dihedral_angle_3_deg19.904
r_dihedral_angle_4_deg19.061
r_dihedral_angle_1_deg7.662
r_scangle_it2.334
r_angle_refined_deg1.571
r_scbond_it1.353
r_mcangle_it1.139
r_angle_other_deg0.878
r_mcbond_it0.607
r_nbd_refined0.251
r_symmetry_vdw_other0.23
r_nbd_other0.203
r_xyhbond_nbd_refined0.195
r_symmetry_hbond_refined0.175
r_symmetry_vdw_refined0.157
r_metal_ion_refined0.156
r_nbtor_other0.093
r_chiral_restr0.085
r_mcbond_other0.074
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7671
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing