1XA3

Crystal structure of CaiB, a type III CoA transferase in carnitine metabolism


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5293PEG 3350, Ammonium Sulphate, Glycerol, Sodium Chloride, Bis-tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.653

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.58α = 90
b = 129.802β = 109.48
c = 69.792γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.980BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.853096.80.0920.0925.823.767674276742-318
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.9589.40.183.463.42

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSAD1.85307284272842386696.710.145150.145150.14340.17821RANDOM17.513
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.490.070.69-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.928
r_scangle_it4.228
r_scbond_it2.771
r_mcangle_it1.594
r_angle_refined_deg1.485
r_mcbond_it0.893
r_angle_other_deg0.857
r_nbd_other0.247
r_symmetry_vdw_refined0.246
r_symmetry_vdw_other0.229
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.928
r_scangle_it4.228
r_scbond_it2.771
r_mcangle_it1.594
r_angle_refined_deg1.485
r_mcbond_it0.893
r_angle_other_deg0.857
r_nbd_other0.247
r_symmetry_vdw_refined0.246
r_symmetry_vdw_other0.229
r_nbd_refined0.224
r_xyhbond_nbd_refined0.145
r_symmetry_hbond_refined0.108
r_chiral_restr0.094
r_nbtor_other0.084
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_gen_planes_other0.008
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6254
Nucleic Acid Atoms
Solvent Atoms640
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing