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Mycobacterial adenylyl cyclase Rv1264, holoenzyme, active state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Rv1264 RESIDUES 1-207 (to be deposited)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 Lithium sulphate, TRIS, PEG 400, GTP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.2 61.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.114 α = 90 b = 114.114 β = 90 c = 151.771 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.9755 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 92.5 0.107 6.1 2.6 9221 8526 -4 -4 64.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.48 81.2 0.311 2.6 2.4 1061
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Rv1264 RESIDUES 1-207 (to be deposited) 3.3 25 9267 8503 408 91.75 0.23756 0.23756 0.23454 0.29941 0.2882 RANDOM 53.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 0.94 1.87 -2.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.817 r_dihedral_angle_3_deg 23.172 r_dihedral_angle_4_deg 19.765 r_dihedral_angle_1_deg 8.87 r_scangle_it 3.352 r_scbond_it 2.019 r_angle_refined_deg 1.535 r_mcangle_it 1.09 r_mcbond_it 0.703 r_symmetry_hbond_refined 0.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.817 r_dihedral_angle_3_deg 23.172 r_dihedral_angle_4_deg 19.765 r_dihedral_angle_1_deg 8.87 r_scangle_it 3.352 r_scbond_it 2.019 r_angle_refined_deg 1.535 r_mcangle_it 1.09 r_mcbond_it 0.703 r_symmetry_hbond_refined 0.446 r_symmetry_vdw_refined 0.369 r_nbtor_refined 0.315 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.236 r_chiral_restr 0.126 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2737 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing