1Z9E
Solution structure of the HIV-1 integrase-binding domain in LEDGF/p75
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.7 mM protein, 100 mM NaCl, 38 mM Na2HPO4, 12 mM NaH2PO4 | 100% D2O | |||||
2 | 3D_15N-separated_NOESY | 0.7 mM protein, 100 mM NaCl, 50 mM Phosphate buffer, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 mM NaCl, 50 mM Posphate buffer | 7.25 | ambient | 298 | |
3 | 3D_13C-separated_NOESY | 0.7 mM protein, 100 mM NaCl, 38 mM Na2HPO4, 12 mM NaH2PO4 | 100% D2O | |||||
4 | HNCA, HNCOCA, HNCO, HNCACO, HNCACB, HNCOCACB, HCCONH, CCONH | 0.7 mM protein, 100 mM NaCl, 50 mM Phosphate buffer, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 mM NaCl, 50 mM Posphate buffer | 7.25 | ambient | 298 | |
5 | HCCH-TOCSY | 0.7 mM protein, 100 mM NaCl, 38 mM Na2HPO4, 12 mM NaH2PO4 | 100% D2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 750 |
2 | Bruker | AVANCE | 600 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | the structure was determined using triple-resonance NMR spectroscopy |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | Brunger, A. |
2 | refinement | X-PLOR | 3.851 | Brunger, A. |