X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BEB 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62772.6M Na malonate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.140.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.24α = 90
b = 94.14β = 105.76
c = 64.15γ = 90
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID291.731140ESRFID29

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1BEB2.119.96637106052431861000.238790.235030.31144RANDOM33.539
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.090.183.87-3.510.015.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.197
r_scangle_it2.8
r_scbond_it1.704
r_angle_refined_deg1.558
r_mcangle_it1.281
r_angle_other_deg0.911
r_mcbond_it0.693
r_symmetry_hbond_refined0.266
r_symmetry_vdw_refined0.26
r_nbd_other0.249
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.197
r_scangle_it2.8
r_scbond_it1.704
r_angle_refined_deg1.558
r_mcangle_it1.281
r_angle_other_deg0.911
r_mcbond_it0.693
r_symmetry_hbond_refined0.266
r_symmetry_vdw_refined0.26
r_nbd_other0.249
r_nbd_refined0.222
r_symmetry_vdw_other0.217
r_xyhbond_nbd_refined0.203
r_nbtor_other0.149
r_chiral_restr0.088
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9684
Nucleic Acid Atoms
Solvent Atoms361
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
ProDCdata collection
XDSdata scaling
MOLREPphasing