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X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2(D-p-FPhF)(O2CCH3)2(O2CO)]
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 20% ethylene glycol, 0.1 M sodium acetate at pH 4.0, and 0.6 M sodium nitrate
Crystal Properties Matthews coefficient Solvent content 1.97 37.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.83 α = 90 b = 77.83 β = 90 c = 37.2 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.34 38.92 99.9 1 27 12.9 26206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.34 1.36 0.808
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 38.945 22132 1167 99.896 0.194 0.1927 0.2005 0.2255 0.2301 RANDOM 22.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.057 -0.057 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.264 r_dihedral_angle_3_deg 12.965 r_dihedral_angle_2_deg 10.555 r_lrange_it 6.611 r_lrange_other 6.518 r_dihedral_angle_1_deg 6.396 r_scangle_it 4.784 r_scangle_other 4.771 r_scbond_it 3.167 r_scbond_other 3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.264 r_dihedral_angle_3_deg 12.965 r_dihedral_angle_2_deg 10.555 r_lrange_it 6.611 r_lrange_other 6.518 r_dihedral_angle_1_deg 6.396 r_scangle_it 4.784 r_scangle_other 4.771 r_scbond_it 3.167 r_scbond_other 3.12 r_mcangle_other 3.092 r_mcangle_it 3.091 r_mcbond_it 2.188 r_mcbond_other 2.185 r_angle_refined_deg 2.024 r_angle_other_deg 1.51 r_symmetry_xyhbond_nbd_refined 0.267 r_symmetry_nbd_refined 0.25 r_nbd_refined 0.249 r_symmetry_nbd_other 0.205 r_xyhbond_nbd_refined 0.199 r_nbtor_refined 0.181 r_nbd_other 0.163 r_chiral_restr 0.104 r_symmetry_nbtor_other 0.091 r_metal_ion_refined 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing