X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.8295PEG 4000, DMSO, ammonium acetate, NAD+, ADA, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.244.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.955α = 90
b = 81.827β = 95.69
c = 188.656γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152002-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.1NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.31087632705508922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.3782.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.3106327057972288387.070.2710.2680.2680.334RANDOM31.924
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2-0.33-1.10.84
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.412
r_dihedral_angle_4_deg22.591
r_dihedral_angle_3_deg21.094
r_dihedral_angle_1_deg6.457
r_scangle_it1.845
r_angle_refined_deg1.473
r_scbond_it1.292
r_angle_other_deg0.848
r_mcangle_it0.836
r_mcbond_it0.697
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.412
r_dihedral_angle_4_deg22.591
r_dihedral_angle_3_deg21.094
r_dihedral_angle_1_deg6.457
r_scangle_it1.845
r_angle_refined_deg1.473
r_scbond_it1.292
r_angle_other_deg0.848
r_mcangle_it0.836
r_mcbond_it0.697
r_symmetry_vdw_other0.256
r_symmetry_vdw_refined0.235
r_symmetry_hbond_refined0.226
r_nbd_refined0.199
r_nbd_other0.191
r_xyhbond_nbd_refined0.185
r_nbtor_refined0.176
r_mcbond_other0.115
r_nbtor_other0.088
r_chiral_restr0.079
r_xyhbond_nbd_other0.069
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11271
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms366

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement