2DG3

Wildtype FK506-binding protein complexed with Rapamycin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629830% PEG MME 2000, 0.2M Ammonium sulphate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4850.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.604α = 90
b = 48.841β = 90
c = 53.966γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1999-09-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-131.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.736.2796.10.05639.26.41284812848
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.722.491.90.15676.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.736.27122011220164795.680.218130.218130.21760.22802RANDOM28.862
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.40.160.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.686
r_dihedral_angle_3_deg10.914
r_dihedral_angle_4_deg8.494
r_dihedral_angle_1_deg5.349
r_angle_refined_deg1.046
r_scangle_it0.731
r_scbond_it0.493
r_mcangle_it0.357
r_nbtor_refined0.308
r_mcbond_it0.208
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.686
r_dihedral_angle_3_deg10.914
r_dihedral_angle_4_deg8.494
r_dihedral_angle_1_deg5.349
r_angle_refined_deg1.046
r_scangle_it0.731
r_scbond_it0.493
r_mcangle_it0.357
r_nbtor_refined0.308
r_mcbond_it0.208
r_nbd_refined0.157
r_symmetry_vdw_refined0.121
r_xyhbond_nbd_refined0.073
r_symmetry_hbond_refined0.072
r_chiral_restr0.063
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms809
Nucleic Acid Atoms
Solvent Atoms160
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing