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Secreted Chorismate Mutase from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 5-15% PEG 4000, 0.2 M sodium acetate, 0.1 M cacodylate buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 50.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.644 α = 90 b = 72.673 β = 104.52 c = 62.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393, 0.9506, 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 31.01 99.8 0.085 10.9 4.1 53094 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.63 99.8 0.4 2.5 4.1 7734
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 31.01 -3 50407 50407 2659 99.81 0.17592 0.17592 0.17412 0.21142 0.2219 RANDOM 14.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 -0.02 0.11 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.09 r_dihedral_angle_4_deg 22.051 r_dihedral_angle_3_deg 13.613 r_scangle_it 4.312 r_dihedral_angle_1_deg 4.105 r_scbond_it 2.676 r_mcangle_it 1.614 r_angle_refined_deg 1.367 r_angle_other_deg 0.944 r_mcbond_it 0.882
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.09 r_dihedral_angle_4_deg 22.051 r_dihedral_angle_3_deg 13.613 r_scangle_it 4.312 r_dihedral_angle_1_deg 4.105 r_scbond_it 2.676 r_mcangle_it 1.614 r_angle_refined_deg 1.367 r_angle_other_deg 0.944 r_mcbond_it 0.882 r_symmetry_vdw_other 0.321 r_symmetry_vdw_refined 0.286 r_mcbond_other 0.258 r_nbd_refined 0.237 r_nbd_other 0.194 r_nbtor_refined 0.182 r_symmetry_hbond_refined 0.153 r_xyhbond_nbd_refined 0.149 r_nbtor_other 0.087 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2702 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MLPHARE phasing