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HERA N-terminal domain in complex with AMP, crystal form 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HV8 PDB-ID 1hv8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 295 14% PEG6000, 0.3M CaCl2, 0.1M Tris/HCl pH7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.04 39.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.582 α = 90 b = 52.887 β = 95.26 c = 44.643 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8015 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 96 0.045 21.2 2.6 53955 53955 12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.22 50 0.596 1.5 1.5 1399
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB-ID 1hv8 1.2 21.82 51147 2703 96.8 0.13726 0.13556 0.1365 0.16824 0.1685 RANDOM 12.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.42 -0.31 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.907 r_dihedral_angle_4_deg 19.669 r_dihedral_angle_3_deg 13.933 r_sphericity_free 9.343 r_dihedral_angle_1_deg 5.483 r_scangle_it 4.679 r_sphericity_bonded 4.63 r_scbond_it 3.494 r_mcangle_it 2.542 r_angle_refined_deg 1.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.907 r_dihedral_angle_4_deg 19.669 r_dihedral_angle_3_deg 13.933 r_sphericity_free 9.343 r_dihedral_angle_1_deg 5.483 r_scangle_it 4.679 r_sphericity_bonded 4.63 r_scbond_it 3.494 r_mcangle_it 2.542 r_angle_refined_deg 1.911 r_mcbond_it 1.87 r_rigid_bond_restr 1.661 r_angle_other_deg 1.037 r_mcbond_other 0.908 r_nbd_refined 0.256 r_symmetry_vdw_other 0.255 r_symmetry_hbond_refined 0.242 r_nbd_other 0.226 r_nbtor_refined 0.195 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.121 r_nbtor_other 0.097 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1841 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling COMO phasing