2HEQ

NMR Structure of Bacillus subtilis protein YorP, Northeast Structural Genomics Target SR399.

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D_15N-separated_NOESY	1.1mM YorP, U-15N, 13C; 20 mM NH4Oac, 100mM NaCl, 10mM DTT, 5mM CaCl2, 0.02% NaN3, 95% H2O, 5% D2O	95% H2O/5% D2O	100mM NaCl	5.5	ambient	298
2	3D_13C-separated_NOESY	1.1mM YorP, U-15N, 13C; 20 mM NH4Oac, 100mM NaCl, 10mM DTT, 5mM CaCl2, 0.02% NaN3, 95% H2O, 5% D2O	95% H2O/5% D2O	100mM NaCl	5.5	ambient	298
3	4D_13C-separated_NOESY	1mM YorP, U-15N, 13C; 20 mM NH4Oac, 100mM NaCl, 10mM DTT, 5mM CaCl2, 0.02% NaN3	100% D2O	100mM NaCl	5.5	ambient	298
4	HNHA	0.8mM YorP, U-15N, 5%-13C; 20 mM NH4Oac, 100mM NaCl, 10mM DTT, 5mM CaCl2, 0.02% NaN3, 95% H2O, 5% D2O	95% H2O/5% D2O	100mM NaCl	5.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Varian	INOVA	750

NMR Refinement
Method	Details	Software
simulated annealing, cns water refinement	THE STRUCTURES ARE BASED ON A TOTAL OF 590 RESTRAINTS. 507 are NOE-DERIVED; SEQUENTIAL [(I-J)=1] = 101; MEDIUM RANGE [1<(I-J)<5] = 87; LONG RANGE [(I-J)>=5] = 315; HYDROGEN BOND RESTRAINTS = 30 (2 PER H-BOND); NUMBER OF NOE RESTRAINTS PER RESIDUE = 6.9 (RESIDES 3-76); DIHEDRAL-ANGLE RESTRAINTS = 53 (26 PHI, 27 PSI); TOTAL NUMBER OF RESTRAINTS PER RESIDUE = 8.0 (RESIDES 3-76); NUMBER OF LONG RANGE RESTRAINTS PER RESIDUE = 4.3; NUMBER OF STRUCTURES COMPUTED = 20; NUMBER OF STRUCTURES USED = 20. AVERAGE DISTANCE VIOLATIONS >0.1 ANG = 0; AVERAGE RMS DISTANCE VIOLATION / CONSTRAINT = 0.004 ANGSTROMS.; MAXIMUM DISTANCE VIOLATION 0.05. AVERAGE DIHEDRAL ANGLE VIOLATIONS: >10 DEG = 0; MAX DIHEDRAL ANGLE VIOLATION = 0.45; AVERAGE RMS ANGLE VIOLATION / CONSTRAINT = 0.14 DEG. RMSD VALUES: BACKBONE ATOMS (N,C,C', RESIDUES 11-20,33-68) = 0.4 ANG; ALL HEAVY ATOMS = 0.9 ANG; PROCHECK (RESIDUES 11-20,33-68): MOST FAVORED REGIONS = 95%; ADDITIONAL ALLOWED REGIONS = 5%; GENEROUSLY ALLOWED REGIONS = 0%; DISALLOWED REGIONS = 1%. 6 NON-NATIVE N-TERMINAL RESIDUES (MAGDPL) AND 8 C-TERMINAL RESDIUES, INLUDING THE HIS TAG, (LEHHHHHH) WERE INCLUDED IN THE STRUCTURE CALCULATION.	Sparky

NMR Ensemble Information
Conformer Selection Criteria	all calculated structures submitted
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	Sparky	3.1	T.D. Goddard, D.G. Kneller
2	processing	NMRPipe	Linuz9	F. Delaglio, A. Bax
3	refinement	X-PLOR-NIH	2.10	C.D. Schwieters, J.J. Kuszewski, N. Tjandra, G.M. Clore
4	refinement	CNS	1.1	A. Brunger, G.L. Warren
5	collection	VNMR	6.1c	Varian
6	data analysis	AutoStructure	2.1.1	Y.J. Huang, G.T. Montelione

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.