2IGR
Solution structure of CB1a, a novel anticancer peptide derived from natural antimicrobial peptide cecropin B
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3mM CB1a peptide; 20% d-HFP; 95% H2O, 5% D2O | 95% H2O/5% D2O | 4.9 | 1 atm | 303 | ||
2 | 2D TOCSY | 3mM CB1a peptide; 20% d-HFP; 95% H2O, 5% D2O | 95% H2O/5% D2O | 4.9 | 1 atm | 303 | ||
3 | DQF-COSY | 3mM CB1a peptide; 20% d-HFP; 95% H2O, 5% D2O | 95% H2O/5% D2O | 4.9 | 1 atm | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | XPLOR-NIH 2.1.09 | Brunger A. T. etall |