2IWA
Unbound glutaminyl cyclotransferase from Carica papaya.
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | CRYSTALS WERE OBTAINED BY THE SITTING-DROP VAPOUR DIFFUSION METHOD EMPLOYING CRYSCHEM-PLATES FROM EQUIVOLUMETRIC DROPS CONTAINING PROTEIN SOLUTION (46-52 MG/ML IN 10MM HEPES PH 7.0, 150MM NACL) AND 28-32% PEG4000, 0.2M MGCL2, 0.1M TRIS-HCL PH 8.5 AS PRECIPITATING SOLUTION. |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.58 | 57 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 97.74 | α = 90 |
b = 97.74 | β = 90 |
c = 64.974 | γ = 120 |
Symmetry | |
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Space Group | P 65 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC CCD | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID14-2 | ESRF | ID14-2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.6 | 39 | 100 | 0.05 | 18.2 | 7.3 | 46684 | 1.5 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 1.6 | 1.69 | 99.9 | 0.38 | 5.4 | 7.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | SIRAS | THROUGHOUT | 1.6 | 39.04 | 45943 | 710 | 100 | 0.148 | 0.148 | 0.168 | RANDOM | 23.06 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.51 | 0.26 | 0.51 | -0.77 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 30.87 |
r_dihedral_angle_4_deg | 16.869 |
r_dihedral_angle_3_deg | 12.238 |
r_dihedral_angle_1_deg | 6.492 |
r_scangle_it | 3.435 |
r_scbond_it | 2.349 |
r_angle_refined_deg | 1.533 |
r_mcangle_it | 1.396 |
r_mcbond_it | 1.006 |
r_nbtor_refined | 0.316 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 2092 |
Nucleic Acid Atoms | |
Solvent Atoms | 309 |
Heterogen Atoms | 59 |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
XPREP | phasing |
SHELXD | phasing |
SHELXE | phasing |