2J1R

Structure of a Streptococcus pneumoniae fucose binding module

X-RAY DIFFRACTION

---

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
1.73	28.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 43.581	α = 90
b = 60.39	β = 90
c = 99.674	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	113					M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.55	20	99.8	0.06	14	4.6		37211		2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.55	1.61	99.7		0.36	3.3	3.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.54	51.99	37211	1992	98.3	0.156	0.154	0.17	0.198	0.21	RANDOM	17.34

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.09			0.38		-0.46

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	14.16
r_scangle_it	4.534
r_scbond_it	3.008
r_mcangle_it	2.014
r_angle_refined_deg	1.627
r_mcbond_it	1.403
r_angle_other_deg	0.906
r_symmetry_vdw_other	0.334
r_nbd_other	0.263
r_symmetry_vdw_refined	0.255
r_symmetry_hbond_refined	0.21
r_nbd_refined	0.189
r_xyhbond_nbd_refined	0.17
r_chiral_restr	0.111
r_nbtor_other	0.087
r_bond_refined_d	0.018
r_gen_planes_other	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.003
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2198
Nucleic Acid Atoms
Solvent Atoms	495
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
MOLREP	phasing