2J9T
BipD of Burkholderia Pseudomallei
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 8.5 | 1 M TRISODIUM CITRATE, 10 MM SODIUM BORATE PH 8.5 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.3 | 46.8 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 136.47 | α = 90 |
b = 89.84 | β = 90 |
c = 50.15 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC CCD | 2005-12-09 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID14-2 | ESRF | ID14-2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.7 | 54.31 | 99.8 | 0.09 | 7.4 | 6.5 | 114952 | 3.6 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2.7 | 2.85 | 99.8 | 0.14 | 2.4 | 3.6 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | ||||
X-RAY DIFFRACTION | MIRAS | THROUGHOUT | 2.7 | 54 | 17569 | 887 | 0.213 | 0.21 | 0.21 | 0.21 | 0.26 | 0.26 | 0.213 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
t_it | 0.926 |
t_angle_deg | 0.531 |
t_nbd | 0.029 |
t_gen_planes | 0.009 |
t_bond_d | 0.004 |
t_trig_c_planes | 0.004 |
t_dihedral_angle_d | |
t_incorr_chiral_ct | |
t_pseud_angle | |
t_omega_torsion |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 3928 |
Nucleic Acid Atoms | |
Solvent Atoms | 44 |
Heterogen Atoms | 21 |
Software
Software | |
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Software Name | Purpose |
TNT | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
SHELXD | phasing |
SHARP | phasing |
SOLOMON | phasing |