X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2GS7PDB ENTRY 2GS7

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.50.1M HEPES PH7.0, 0.2M LI2SO4, 28% PEG3350, 5MM TCEP, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.5852.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.087α = 90
b = 98.989β = 109.94
c = 73.326γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2006-10-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-CAPS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.55091.30.185.82.78699-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.53.77930.42.82.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2GS73.525821342890.20.2530.2510.284RANDOM45.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.961.93-1.03-3.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.842
r_dihedral_angle_3_deg29.226
r_dihedral_angle_4_deg25.58
r_scangle_it2.184
r_mcangle_it2.06
r_dihedral_angle_1_deg1.684
r_scbond_it1.439
r_mcbond_it1.241
r_angle_refined_deg1.046
r_nbd_refined0.447
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.842
r_dihedral_angle_3_deg29.226
r_dihedral_angle_4_deg25.58
r_scangle_it2.184
r_mcangle_it2.06
r_dihedral_angle_1_deg1.684
r_scbond_it1.439
r_mcbond_it1.241
r_angle_refined_deg1.046
r_nbd_refined0.447
r_chiral_restr0.399
r_nbtor_refined0.374
r_xyhbond_nbd_refined0.356
r_symmetry_vdw_refined0.319
r_symmetry_hbond_refined0.147
r_gen_planes_refined0.022
r_bond_refined_d0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4277
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing