2JOK

NMR structure of the catalytic domain of guanine nucleotide exchange factor BopE from Burkholderia pseudomallei

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
2	2D 1H-13C HSQC	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
3	2D 1H-1H TOCSY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
4	2D 1H-1H NOESY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
5	3D CBCA(CO)NH	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
6	3D C(CO)NH	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
7	3D HNCO	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
8	3D HNCA	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
9	3D HNCACB	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
10	3D HBHA(CO)NH	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
11	3D HN(CO)CA	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
12	3D H(CCO)NH	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
13	3D HCCH-TOCSY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
14	3D HCCH-TOCSY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
15	3D HNHA	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
16	3D 1H-15N NOESY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
17	3D 1H-15N TOCSY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
18	3D 1H-13C NOESY	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298
19	IPAP-HSQC	0.8 mM protein, 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM DTT, 1 mM benzamidine	90% H2O/10% D2O	100	5.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing		Sparky

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	40
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	Sparky		Goddard
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	data analysis	TALOS		Cornilescu, Delaglio and Bax
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore